miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 138136 0.67 0.819866
Target:  5'- cGGCGggGCccggGGGCGCGCCCcGCaCCc- -3'
miRNA:   3'- -UCGCuuUG----CUUGUGCGGGaCGcGGac -5'
23565 3' -56.1 NC_005261.1 + 137914 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 137766 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 136963 0.67 0.853095
Target:  5'- gGGCaaGAGACGAAgACGgCCUcgucccCGCCUGg -3'
miRNA:   3'- -UCG--CUUUGCUUgUGCgGGAc-----GCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 136630 0.67 0.83686
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 136609 0.67 0.819866
Target:  5'- cGUGGAGCG-GCGCGCgC-GCGCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUGCGgGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 136483 0.67 0.845076
Target:  5'- cGCGGgcagcAGCGAGCA-GCUCgGCGCCg- -3'
miRNA:   3'- uCGCU-----UUGCUUGUgCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 136374 0.68 0.783859
Target:  5'- cGCGgcGCGucuuCGgGCCCgGCGCCUu -3'
miRNA:   3'- uCGCuuUGCuu--GUgCGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 135970 0.67 0.845076
Target:  5'- cGGCGAgGACGA--GCGCCg-GCGgCCUGa -3'
miRNA:   3'- -UCGCU-UUGCUugUGCGGgaCGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 135829 0.69 0.725869
Target:  5'- cGCGGGgcccGCGGGCGCGCUCgccgccagcGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUGCGGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 135484 0.68 0.802176
Target:  5'- cGGCGAgaaccuGAUGGACGCGCuggCCUcagccgacgaGUGCCUGa -3'
miRNA:   3'- -UCGCU------UUGCUUGUGCG---GGA----------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 134783 0.68 0.755363
Target:  5'- cGGCGcgGCGGcccGCGCGCCC---GCCUGg -3'
miRNA:   3'- -UCGCuuUGCU---UGUGCGGGacgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 134660 0.76 0.367164
Target:  5'- cGGUGGAGCGcGCGCGCCUuagcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 134504 0.7 0.644275
Target:  5'- uGCacuACGAGCACaG-CCUGCGCCUGc -3'
miRNA:   3'- uCGcuuUGCUUGUG-CgGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 134443 0.68 0.755363
Target:  5'- cGCGAGcugGCGGAC-CGCUgcgCUGCgGCCUGc -3'
miRNA:   3'- uCGCUU---UGCUUGuGCGG---GACG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 134328 0.7 0.664908
Target:  5'- cGGCGgcGCGG--GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 134285 0.67 0.845076
Target:  5'- uGCGgcGCGcguACGCGCCCaUG-GCCUa -3'
miRNA:   3'- uCGCuuUGCu--UGUGCGGG-ACgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 134238 0.8 0.207922
Target:  5'- cGGCGugGCGcACGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCuUGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 134055 0.71 0.634973
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 133915 0.67 0.845076
Target:  5'- cGCGAGGCGGccGCGCGCUacgcgGCgGCCg- -3'
miRNA:   3'- uCGCUUUGCU--UGUGCGGga---CG-CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.