miRNA display CGI


Results 21 - 40 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 51405 0.76 0.35114
Target:  5'- gAGCGGAGCccGCGCGCCCacCGCCUGc -3'
miRNA:   3'- -UCGCUUUGcuUGUGCGGGacGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 65358 0.76 0.35114
Target:  5'- cGGCGggGCGGACcUGCCCgcgguccaCGCCUGg -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGac------GCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 56802 0.76 0.35114
Target:  5'- cGCGggGCGGccgACgACGCcgCCUGUGCCUGg -3'
miRNA:   3'- uCGCuuUGCU---UG-UGCG--GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 20195 0.76 0.356691
Target:  5'- aGGCGAAGCGGGgccgccaaaggcccCGCGCCC-GCuGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUU--------------GUGCGGGaCG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 83660 0.76 0.359089
Target:  5'- cGUGAGGCGGACGCGCgCCUgggcgcgcagcGCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUGUGCG-GGA-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 30142 0.76 0.367164
Target:  5'- cGGUGGAGCGcGCGCGCCUuagcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 62838 0.76 0.367164
Target:  5'- cGGCGGggGACuGGCGCGCCCcGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGcUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 132525 0.76 0.367164
Target:  5'- gGGaCGAGuACGAGCGCGCCCUcGCGCg-- -3'
miRNA:   3'- -UC-GCUU-UGCUUGUGCGGGA-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 60559 0.76 0.367164
Target:  5'- cGGCc---CGucCGCGCCCUGCGCCUGc -3'
miRNA:   3'- -UCGcuuuGCuuGUGCGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 92738 0.76 0.367164
Target:  5'- gGGCGGggacAGCGAGCGcCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU----UUGCUUGU-GCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 134660 0.76 0.367164
Target:  5'- cGGUGGAGCGcGCGCGCCUuagcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4603 0.76 0.367164
Target:  5'- cGGCGcgGCGAGCGCgGCCCacaGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCUUGUG-CGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 42266 0.75 0.375362
Target:  5'- cGCGAGGCGGcCGCGCCCaGCaGCCg- -3'
miRNA:   3'- uCGCUUUGCUuGUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 86688 0.75 0.382846
Target:  5'- cGGCGAGGCGGcccacguACGCGCCCaGCGCg-- -3'
miRNA:   3'- -UCGCUUUGCU-------UGUGCGGGaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 131986 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 27469 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 80251 0.75 0.383684
Target:  5'- uGGCGgcGCGGccGCGCGCgCCUGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4118 0.75 0.392126
Target:  5'- aGGCGGAagucggcgGCGAGCGCGCgCCggcGCGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCG-GGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 43434 0.75 0.392126
Target:  5'- cGGCGGG--GAGCugGCUCgGCGCCUGg -3'
miRNA:   3'- -UCGCUUugCUUGugCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 37245 0.75 0.392126
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.