miRNA display CGI


Results 21 - 40 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 36385 0.66 0.860909
Target:  5'- aGGCGGccGGCGGGCGCGCggcggagaucagCC-GCGCgCUGg -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCG------------GGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 62559 0.66 0.860909
Target:  5'- cGGCGAGgaagagguucuGCGcGCGCGCCaggaacGCGCCg- -3'
miRNA:   3'- -UCGCUU-----------UGCuUGUGCGGga----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 104367 0.66 0.883065
Target:  5'- aGGCGGgcGGCGGggggcccucccgGCcCGCCCaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCU------------UGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 43647 0.66 0.883065
Target:  5'- gGGCGGA--GGGCGCGUUCgGCGCCc- -3'
miRNA:   3'- -UCGCUUugCUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 82855 0.66 0.868513
Target:  5'- cGGCGGcAGCGGcgGCGgGCCaggCUGgGCCUGc -3'
miRNA:   3'- -UCGCU-UUGCU--UGUgCGG---GACgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 56462 0.66 0.883065
Target:  5'- cGCGAGcuCGucCugGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUUu-GCuuGugCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79520 0.66 0.882359
Target:  5'- cGGCGGuggcgcaccucucAGCG-GCGCGCCCUGacgGCCc- -3'
miRNA:   3'- -UCGCU-------------UUGCuUGUGCGGGACg--CGGac -5'
23565 3' -56.1 NC_005261.1 + 104014 0.66 0.883065
Target:  5'- cGCGucuGCGucCGCGUCCgacGCGCCg- -3'
miRNA:   3'- uCGCuu-UGCuuGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 67692 0.66 0.8759
Target:  5'- cGGCGGGugGGGCGCGg---GCGCCg- -3'
miRNA:   3'- -UCGCUUugCUUGUGCgggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 22034 0.66 0.868513
Target:  5'- gAGCGcuucuGCGGcgACGCGCCCagcgGCGUCg- -3'
miRNA:   3'- -UCGCuu---UGCU--UGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 91730 0.66 0.8759
Target:  5'- cGCGAcgcCGGGCuGCGCCCcgcggaggGCGCCg- -3'
miRNA:   3'- uCGCUuu-GCUUG-UGCGGGa-------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 37112 0.66 0.8759
Target:  5'- cGCGAGgaccACGAGgGCGCCaagGCGCg-- -3'
miRNA:   3'- uCGCUU----UGCUUgUGCGGga-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 67289 0.66 0.860909
Target:  5'- cGGCGuucccGGCGGACGCGCag-GCGCUg- -3'
miRNA:   3'- -UCGCu----UUGCUUGUGCGggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 82776 0.66 0.860909
Target:  5'- aAGCGA--CG-ACugGCCCaccGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCuUGugCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 102797 0.66 0.883065
Target:  5'- cGCGggGCGGGCggGCGCuUCUGcCGUCa- -3'
miRNA:   3'- uCGCuuUGCUUG--UGCG-GGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 43816 0.66 0.860909
Target:  5'- cGGCGccGCGGACgucGCGCCCUuCGUCg- -3'
miRNA:   3'- -UCGCuuUGCUUG---UGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 122695 0.66 0.860909
Target:  5'- cGCGucGCGAACgACGCCUUccGCuccuGCCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGA--CG----CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 119043 0.66 0.883065
Target:  5'- gGGCGAAgGCGAcUGCGCCCgGCaGCUg- -3'
miRNA:   3'- -UCGCUU-UGCUuGUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 51454 0.66 0.883065
Target:  5'- gAGCGuguucGACGAGgACGUCaC-GUGCCUGg -3'
miRNA:   3'- -UCGCu----UUGCUUgUGCGG-GaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 36653 0.66 0.868513
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.