miRNA display CGI


Results 41 - 60 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 119043 0.66 0.883065
Target:  5'- gGGCGAAgGCGAcUGCGCCCgGCaGCUg- -3'
miRNA:   3'- -UCGCUU-UGCUuGUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 79520 0.66 0.882359
Target:  5'- cGGCGGuggcgcaccucucAGCG-GCGCGCCCUGacgGCCc- -3'
miRNA:   3'- -UCGCU-------------UUGCuUGUGCGGGACg--CGGac -5'
23565 3' -56.1 NC_005261.1 + 14956 0.66 0.880939
Target:  5'- aAGCGAGcgggcgugccugggGCGAcuGCGCGgCC-GCGCCg- -3'
miRNA:   3'- -UCGCUU--------------UGCU--UGUGCgGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29066 0.66 0.878793
Target:  5'- uAGCGGA--GAACcUGCCCggccuggugcugugGCGCCUGc -3'
miRNA:   3'- -UCGCUUugCUUGuGCGGGa-------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 69384 0.66 0.8759
Target:  5'- -uCGAGAUGAccGC-CGUCCUGaGCCUGg -3'
miRNA:   3'- ucGCUUUGCU--UGuGCGGGACgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 106345 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 37112 0.66 0.8759
Target:  5'- cGCGAGgaccACGAGgGCGCCaagGCGCg-- -3'
miRNA:   3'- uCGCUU----UGCUUgUGCGGga-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 130219 0.66 0.8759
Target:  5'- aGGCGGAA-GAGCGuCgGCCCgcucagGCGCCg- -3'
miRNA:   3'- -UCGCUUUgCUUGU-G-CGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 67692 0.66 0.8759
Target:  5'- cGGCGGGugGGGCGCGg---GCGCCg- -3'
miRNA:   3'- -UCGCUUugCUUGUGCgggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 57543 0.66 0.8759
Target:  5'- cGGCGc-ACGGgcacacgucgcACGCGCCCggcuccgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU-----------UGUGCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 44300 0.66 0.8759
Target:  5'- cGGCGcccGCGGACGgcgcaaGCCCgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu-UGCUUGUg-----CGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 91730 0.66 0.8759
Target:  5'- cGCGAcgcCGGGCuGCGCCCcgcggaggGCGCCg- -3'
miRNA:   3'- uCGCUuu-GCUUG-UGCGGGa-------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 114328 0.66 0.8759
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 98312 0.66 0.8759
Target:  5'- gGGCGGgcgccgccgccAGCGGcgGCGCGCCCcGUGUCg- -3'
miRNA:   3'- -UCGCU-----------UUGCU--UGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 73034 0.66 0.8759
Target:  5'- cAGcCGucGCGccACGCGCCCcccGCGCCUa -3'
miRNA:   3'- -UC-GCuuUGCu-UGUGCGGGa--CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 77135 0.66 0.8759
Target:  5'- cGCGAcaaGugGGACAcCGUCUcGCGCCg- -3'
miRNA:   3'- uCGCU---UugCUUGU-GCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 59245 0.66 0.8759
Target:  5'- gAGCGAGAgCGG--GCGCCg-GCGCCa- -3'
miRNA:   3'- -UCGCUUU-GCUugUGCGGgaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 47788 0.66 0.8759
Target:  5'- aAGCGGAAgGGcccgauccGCGCGCgCaGCGCCa- -3'
miRNA:   3'- -UCGCUUUgCU--------UGUGCGgGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 68240 0.66 0.8759
Target:  5'- cGGCGggGgcguguucgUGGACugccugGCGCgCCUGCGCCc- -3'
miRNA:   3'- -UCGCuuU---------GCUUG------UGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 39941 0.66 0.8759
Target:  5'- aAGgGGAccGCGAACACggaGCCCUcGCGCa-- -3'
miRNA:   3'- -UCgCUU--UGCUUGUG---CGGGA-CGCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.