miRNA display CGI


Results 61 - 80 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 76659 0.66 0.8759
Target:  5'- uGCGAGGuCGGcgccguGCugGCCCU-CGCCg- -3'
miRNA:   3'- uCGCUUU-GCU------UGugCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 77135 0.66 0.8759
Target:  5'- cGCGAcaaGugGGACAcCGUCUcGCGCCg- -3'
miRNA:   3'- uCGCU---UugCUUGU-GCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 117478 0.66 0.873707
Target:  5'- cGGCGAcGCGcuGCugcgcuucuaccuuGCGCCCgccgGCGCCg- -3'
miRNA:   3'- -UCGCUuUGCu-UG--------------UGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 22034 0.66 0.868513
Target:  5'- gAGCGcuucuGCGGcgACGCGCCCagcgGCGUCg- -3'
miRNA:   3'- -UCGCuu---UGCU--UGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 82855 0.66 0.868513
Target:  5'- cGGCGGcAGCGGcgGCGgGCCaggCUGgGCCUGc -3'
miRNA:   3'- -UCGCU-UUGCU--UGUgCGG---GACgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 36653 0.66 0.868513
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 19380 0.66 0.868513
Target:  5'- cGCGGG-CGcGC-CGCCCUccGCGCCg- -3'
miRNA:   3'- uCGCUUuGCuUGuGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 78751 0.66 0.868513
Target:  5'- uGGCGcgGCGGcCGCGCCg-GCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGgaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 69267 0.66 0.868513
Target:  5'- -nCGAccccGGCGAGC-CGCCC-GCGCCg- -3'
miRNA:   3'- ucGCU----UUGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 106021 0.66 0.868513
Target:  5'- cAGCGAGGacCGGagGCACGCCaCcGCGCUg- -3'
miRNA:   3'- -UCGCUUU--GCU--UGUGCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 90714 0.66 0.868513
Target:  5'- cGGCGGuauauacACGAccGCugGgCC-GCGCCUGa -3'
miRNA:   3'- -UCGCUu------UGCU--UGugCgGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 21016 0.66 0.868513
Target:  5'- gGGCGuGACaccgagcccuggGGGCGCGCaCCgUGCGCCa- -3'
miRNA:   3'- -UCGCuUUG------------CUUGUGCG-GG-ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100312 0.66 0.868513
Target:  5'- cGCGucGCGGGCGCGCUCgaucuccagGCGCa-- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGa--------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 97207 0.66 0.868513
Target:  5'- aAGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116521 0.66 0.868513
Target:  5'- cGGCGgcGCGAGgcccgccgcucCGCGCCCgcgcGCGUCa- -3'
miRNA:   3'- -UCGCuuUGCUU-----------GUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 76876 0.66 0.868513
Target:  5'- cGGCGAGGaggcCGAcgGCACGCUCUuCGCCc- -3'
miRNA:   3'- -UCGCUUU----GCU--UGUGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97129 0.66 0.868513
Target:  5'- aGGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 115339 0.66 0.867009
Target:  5'- -cCGGGACGuguacuucaugcGCACGCUgUGCGCCUc -3'
miRNA:   3'- ucGCUUUGCu-----------UGUGCGGgACGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 15769 0.66 0.866254
Target:  5'- cGCGAuacacaaggccgcuGGCGGGCGcCGCCCgcgcggccaGCGCCg- -3'
miRNA:   3'- uCGCU--------------UUGCUUGU-GCGGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 17195 0.66 0.865497
Target:  5'- cGCGGcGGCGAgcaGCGCGCCCagcacggacagcaGCGCCa- -3'
miRNA:   3'- uCGCU-UUGCU---UGUGCGGGa------------CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.