miRNA display CGI


Results 61 - 80 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 19380 0.66 0.868513
Target:  5'- cGCGGG-CGcGC-CGCCCUccGCGCCg- -3'
miRNA:   3'- uCGCUUuGCuUGuGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 19407 0.66 0.892714
Target:  5'- gAGCGGcagugccgcgcccagGGCGcAgACGCCCacgUGCGCCa- -3'
miRNA:   3'- -UCGCU---------------UUGCuUgUGCGGG---ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 19854 0.67 0.845076
Target:  5'- cAGCGccuCGGgccGCGCGCCCcaGCGCCc- -3'
miRNA:   3'- -UCGCuuuGCU---UGUGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 19926 0.68 0.802176
Target:  5'- cGCGguGCGGAaguGCGCCCcgGUGCCc- -3'
miRNA:   3'- uCGCuuUGCUUg--UGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 20195 0.76 0.356691
Target:  5'- aGGCGAAGCGGGgccgccaaaggcccCGCGCCC-GCuGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUU--------------GUGCGGGaCG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 20334 0.67 0.819866
Target:  5'- cGCGc-ACGAGCgACGCCC-GCGgCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGaCGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 21016 0.66 0.868513
Target:  5'- gGGCGuGACaccgagcccuggGGGCGCGCaCCgUGCGCCa- -3'
miRNA:   3'- -UCGCuUUG------------CUUGUGCG-GG-ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21546 0.69 0.74563
Target:  5'- gAGCGAGGCGcucgcGAUugGgCCgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGC-----UUGugCgGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21707 0.71 0.592662
Target:  5'- cGCGGAGCG-GCGgGCCUcGCGCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUgCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21731 0.67 0.845076
Target:  5'- -uCGAGcCGAucgACACGCggcugCUGCGCCUGg -3'
miRNA:   3'- ucGCUUuGCU---UGUGCGg----GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 21869 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 22034 0.66 0.868513
Target:  5'- gAGCGcuucuGCGGcgACGCGCCCagcgGCGUCg- -3'
miRNA:   3'- -UCGCuu---UGCU--UGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 22748 0.7 0.685433
Target:  5'- cGCGggGCGGcgGCG-GCCCacGCGUCUGg -3'
miRNA:   3'- uCGCuuUGCU--UGUgCGGGa-CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 23185 0.73 0.502131
Target:  5'- gGGCGAcAGCGAGCGCGCCgCgGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGG-GaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 23421 0.71 0.592662
Target:  5'- cGGCGAGGCGcuGCGCGUCgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCu-UGUGCGGga-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 25290 0.69 0.744651
Target:  5'- cGGCGAAgucgaagGCGAGCGCgccGCCCU-CGCCc- -3'
miRNA:   3'- -UCGCUU-------UGCUUGUG---CGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 26635 0.7 0.675188
Target:  5'- uGCGGuuaGAACAgGUCCUGCcCCUGg -3'
miRNA:   3'- uCGCUuugCUUGUgCGGGACGcGGAC- -5'
23565 3' -56.1 NC_005261.1 + 27469 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 27679 0.68 0.764985
Target:  5'- cGCGGGuguGCGGccugguccgugcGCGCGCCCUccuGCGCCc- -3'
miRNA:   3'- uCGCUU---UGCU------------UGUGCGGGA---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 28118 0.7 0.664908
Target:  5'- cAGCGucagGACGGGCGCGCCgggGCGCUc- -3'
miRNA:   3'- -UCGCu---UUGCUUGUGCGGga-CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.