miRNA display CGI


Results 81 - 100 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 85584 0.66 0.839697
Target:  5'- cGCGGG-GCCGggggcGGAGACguguaccguacCGCGCGa -3'
miRNA:   3'- aCGUCCgCGGU-----UCUCUGaa---------GCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 13769 0.66 0.824647
Target:  5'- cGUGGGCGCCccuGAGGGcacccggccccgGCUgguguggCGgCGCGCg -3'
miRNA:   3'- aCGUCCGCGG---UUCUC------------UGAa------GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67704 0.66 0.823794
Target:  5'- cGCGGGCGCCGccGuGGCgaUCGUccccgugGCGCc -3'
miRNA:   3'- aCGUCCGCGGUu-CuCUGa-AGCG-------CGCG- -5'
23565 5' -57.2 NC_005261.1 + 91639 0.66 0.841332
Target:  5'- cGCA-GUGCCcGGGGcCgugUCGCGCGa -3'
miRNA:   3'- aCGUcCGCGGuUCUCuGa--AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 54282 0.66 0.840515
Target:  5'- cGCGGGUgggGCgGGGAcagcgauGGCggcCGCGCGCu -3'
miRNA:   3'- aCGUCCG---CGgUUCU-------CUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 1901 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11099 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 108908 0.66 0.816036
Target:  5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 95845 0.66 0.823794
Target:  5'- gUGCAGGCGCagcuGGGCcggcaccaguacgUUUGCGCGg -3'
miRNA:   3'- -ACGUCCGCGguucUCUG-------------AAGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 6779 0.66 0.824647
Target:  5'- gGgAGGCGCCcgcGAGGCg-CG-GCGCa -3'
miRNA:   3'- aCgUCCGCGGuu-CUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 26038 0.66 0.833082
Target:  5'- aGUAGGUagcagcugGCCAGcGAG-CccCGCGCGCg -3'
miRNA:   3'- aCGUCCG--------CGGUU-CUCuGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60580 0.66 0.824647
Target:  5'- cUGCAGGCGCCGGccGuCggCGaugGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUcuCuGaaGCg--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 108439 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 63437 0.66 0.841332
Target:  5'- cGCGGGCcUCGAuAGGCcggaUGCGCGCg -3'
miRNA:   3'- aCGUCCGcGGUUcUCUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 23036 0.66 0.807257
Target:  5'- cGCacGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCG--UCCGCGGuuCuc--UGAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 24741 0.66 0.807257
Target:  5'- cGCAGcGCGCgCAucAGcGGCaggUUCGgGCGCa -3'
miRNA:   3'- aCGUC-CGCG-GU--UCuCUG---AAGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 134319 0.66 0.807257
Target:  5'- gGCcGGCGCCGgcGGcgcGGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU--UC---UCUGaa-GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 60413 0.66 0.849391
Target:  5'- cGguGGUGCUggGGcGGCagcucggCGgGCGCg -3'
miRNA:   3'- aCguCCGCGGuuCU-CUGaa-----GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 19735 0.66 0.833082
Target:  5'- aGC-GGCGCCAGGGucCgcaGCGcCGCa -3'
miRNA:   3'- aCGuCCGCGGUUCUcuGaagCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 3922 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.