miRNA display CGI


Results 81 - 100 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 76009 0.66 0.849391
Target:  5'- cGCgaGGGCGC--AGAcGCggcCGCGCGCa -3'
miRNA:   3'- aCG--UCCGCGguUCUcUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 43360 0.66 0.849391
Target:  5'- cGCGGGcCGCCcgcccGGGC--CGUGCGCg -3'
miRNA:   3'- aCGUCC-GCGGuuc--UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13675 0.66 0.816036
Target:  5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 86595 0.66 0.849391
Target:  5'- gGCGGGC-CCGGGcAGcACUU-GCGUGUa -3'
miRNA:   3'- aCGUCCGcGGUUC-UC-UGAAgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106418 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 82275 0.66 0.849391
Target:  5'- cGCGggagacccGGCGCCGGGGagccaaacGGCU--GCGCGCc -3'
miRNA:   3'- aCGU--------CCGCGGUUCU--------CUGAagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 123099 0.66 0.849391
Target:  5'- gGCGGGgGCgAAG-GAg-UCGCGaCGCc -3'
miRNA:   3'- aCGUCCgCGgUUCuCUgaAGCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 63976 0.66 0.849391
Target:  5'- cGCGcGCGCgAAuGGGACguacUCGgCGCGCc -3'
miRNA:   3'- aCGUcCGCGgUU-CUCUGa---AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 549 0.66 0.816036
Target:  5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3'
miRNA:   3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 60739 0.66 0.848594
Target:  5'- gGCGGGCGgCAGGAaguacggGGCgggCGgGgGCg -3'
miRNA:   3'- aCGUCCGCgGUUCU-------CUGaa-GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 49379 0.66 0.849391
Target:  5'- cGCgAGGCGCggccCAGGuagccgacgccGGGCcggCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCG----GUUC-----------UCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 82010 0.66 0.816036
Target:  5'- cUGguGGCGCUuGGGGGC--CGCGacgGCg -3'
miRNA:   3'- -ACguCCGCGGuUCUCUGaaGCGCg--CG- -5'
23565 5' -57.2 NC_005261.1 + 133831 0.66 0.833082
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 117541 0.66 0.849391
Target:  5'- cGC-GGCGCCgGAGGGGCUgacCGUGUu -3'
miRNA:   3'- aCGuCCGCGG-UUCUCUGAagcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83147 0.66 0.848594
Target:  5'- cUGCAGGUGCggCAGGuacuGGCUcacgucgcagagcUCGgUGCGCa -3'
miRNA:   3'- -ACGUCCGCG--GUUCu---CUGA-------------AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67373 0.66 0.841332
Target:  5'- gGCAGcGCcaccGCCGcGaAGACcgcCGCGCGCg -3'
miRNA:   3'- aCGUC-CG----CGGUuC-UCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 94912 0.66 0.849391
Target:  5'- cUGgAGGCGaggaAGGAGcGCUUCGCGaCGg -3'
miRNA:   3'- -ACgUCCGCgg--UUCUC-UGAAGCGC-GCg -5'
23565 5' -57.2 NC_005261.1 + 11099 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60580 0.66 0.824647
Target:  5'- cUGCAGGCGCCGGccGuCggCGaugGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUcuCuGaaGCg--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 109775 0.66 0.828042
Target:  5'- gGCucGGCccGCCGGGAGACgcCauggccggccgcgguGCGCGCg -3'
miRNA:   3'- aCGu-CCG--CGGUUCUCUGaaG---------------CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.