miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 76009 0.66 0.849391
Target:  5'- cGCgaGGGCGC--AGAcGCggcCGCGCGCa -3'
miRNA:   3'- aCG--UCCGCGguUCUcUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 19656 0.66 0.833082
Target:  5'- gGCGGcgcGCGCCGccgcgcgcgcGGGcacGGCguccUCGCGCGCg -3'
miRNA:   3'- aCGUC---CGCGGU----------UCU---CUGa---AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 58996 0.66 0.849391
Target:  5'- gUGCuGGGCGCCGc-GGGCgcCGCGCu- -3'
miRNA:   3'- -ACG-UCCGCGGUucUCUGaaGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 49447 0.66 0.849391
Target:  5'- cUGCGcGGCGCCGGcggccagggccGAGGag-CGCaGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUU-----------CUCUgaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 67704 0.66 0.823794
Target:  5'- cGCGGGCGCCGccGuGGCgaUCGUccccgugGCGCc -3'
miRNA:   3'- aCGUCCGCGGUu-CuCUGa-AGCG-------CGCG- -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 133831 0.66 0.833082
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83067 0.66 0.849391
Target:  5'- cGCgAGcCGCCGgcGGcGGCgcUCGCGCGCg -3'
miRNA:   3'- aCG-UCcGCGGU--UCuCUGa-AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 44585 0.66 0.849391
Target:  5'- gGUGGGCGUacgcGGACcUCGCGCuGCu -3'
miRNA:   3'- aCGUCCGCGguucUCUGaAGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 9844 0.66 0.840515
Target:  5'- aUGC-GGCGCgAGGAagcgaugGACUUCuggaGCGCGg -3'
miRNA:   3'- -ACGuCCGCGgUUCU-------CUGAAG----CGCGCg -5'
23565 5' -57.2 NC_005261.1 + 78479 0.66 0.824647
Target:  5'- aUGgAGGCcuGCCugguGGAgGGCggcCGCGCGCc -3'
miRNA:   3'- -ACgUCCG--CGGu---UCU-CUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 95845 0.66 0.823794
Target:  5'- gUGCAGGCGCagcuGGGCcggcaccaguacgUUUGCGCGg -3'
miRNA:   3'- -ACGUCCGCGguucUCUG-------------AAGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 31696 0.66 0.807257
Target:  5'- cGCGGcCGCCGccgaGGAGGCggUGCugGCGCu -3'
miRNA:   3'- aCGUCcGCGGU----UCUCUGaaGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 549 0.66 0.816036
Target:  5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3'
miRNA:   3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 43814 0.66 0.816036
Target:  5'- gGC-GGCGCCGc-GGACgUCGCGCc- -3'
miRNA:   3'- aCGuCCGCGGUucUCUGaAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 7630 0.66 0.807257
Target:  5'- cGCAGGCaaagacggGCCAGGcgcgGGGC--CGCGCGg -3'
miRNA:   3'- aCGUCCG--------CGGUUC----UCUGaaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 46774 0.66 0.824647
Target:  5'- gGgAGGCGCgGGcGGGGCcgUGCcGCGCa -3'
miRNA:   3'- aCgUCCGCGgUU-CUCUGaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 106418 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 100464 0.66 0.824647
Target:  5'- cGUugGGGCGCCGGcgcuuGGGCggCGCgGCGCc -3'
miRNA:   3'- aCG--UCCGCGGUUc----UCUGaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 93995 0.66 0.849391
Target:  5'- gGCcGcGCGCUggGcGGCcagcagCGCGCGCu -3'
miRNA:   3'- aCGuC-CGCGGuuCuCUGaa----GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.