miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 67704 0.66 0.823794
Target:  5'- cGCGGGCGCCGccGuGGCgaUCGUccccgugGCGCc -3'
miRNA:   3'- aCGUCCGCGGUu-CuCUGa-AGCG-------CGCG- -5'
23565 5' -57.2 NC_005261.1 + 34364 0.66 0.84377
Target:  5'- gGC-GGCGCCGccccgccgccgccgcGGC-UCGCGCGCa -3'
miRNA:   3'- aCGuCCGCGGUucu------------CUGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 32079 0.66 0.832246
Target:  5'- cGCGGaGCGgCGAGGcggcaccauguccGGCguugccggCGCGCGCg -3'
miRNA:   3'- aCGUC-CGCgGUUCU-------------CUGaa------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 54282 0.66 0.840515
Target:  5'- cGCGGGUgggGCgGGGAcagcgauGGCggcCGCGCGCu -3'
miRNA:   3'- aCGUCCG---CGgUUCU-------CUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 44585 0.66 0.849391
Target:  5'- gGUGGGCGUacgcGGACcUCGCGCuGCu -3'
miRNA:   3'- aCGUCCGCGguucUCUGaAGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 60580 0.66 0.824647
Target:  5'- cUGCAGGCGCCGGccGuCggCGaugGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUcuCuGaaGCg--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 87440 0.66 0.833082
Target:  5'- gGCGgcGGCGCCGGGGcGGCcgcCGC-CGCg -3'
miRNA:   3'- aCGU--CCGCGGUUCU-CUGaa-GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 108439 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 49447 0.66 0.849391
Target:  5'- cUGCGcGGCGCCGGcggccagggccGAGGag-CGCaGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUU-----------CUCUgaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 56243 0.66 0.833082
Target:  5'- gGCAGcGCGCaCA----ACUUCGCGCaGCc -3'
miRNA:   3'- aCGUC-CGCG-GUucucUGAAGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 31696 0.66 0.807257
Target:  5'- cGCGGcCGCCGccgaGGAGGCggUGCugGCGCu -3'
miRNA:   3'- aCGUCcGCGGU----UCUCUGaaGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 123099 0.66 0.849391
Target:  5'- gGCGGGgGCgAAG-GAg-UCGCGaCGCc -3'
miRNA:   3'- aCGUCCgCGgUUCuCUgaAGCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 100464 0.66 0.824647
Target:  5'- cGUugGGGCGCCGGcgcuuGGGCggCGCgGCGCc -3'
miRNA:   3'- aCG--UCCGCGGUUc----UCUGaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 106418 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 72710 0.66 0.841332
Target:  5'- cGCGGccGCGCUggGuGAUggaGUGCGCc -3'
miRNA:   3'- aCGUC--CGCGGuuCuCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 33883 0.66 0.815166
Target:  5'- cGCGGGCGgCGcugcgcgacggccGGccGCUggaCGCGCGCg -3'
miRNA:   3'- aCGUCCGCgGU-------------UCucUGAa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 82010 0.66 0.816036
Target:  5'- cUGguGGCGCUuGGGGGC--CGCGacgGCg -3'
miRNA:   3'- -ACguCCGCGGuUCUCUGaaGCGCg--CG- -5'
23565 5' -57.2 NC_005261.1 + 22283 0.66 0.816036
Target:  5'- gUGCuGGGCGCguAcGAGuaccCUgcccCGCGCGCg -3'
miRNA:   3'- -ACG-UCCGCGguU-CUCu---GAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 109775 0.66 0.828042
Target:  5'- gGCucGGCccGCCGGGAGACgcCauggccggccgcgguGCGCGCg -3'
miRNA:   3'- aCGu-CCG--CGGUUCUCUGaaG---------------CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.