miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 34362 0.75 0.358017
Target:  5'- gGcCGGGCGCCGcGcGGCgcCGCGCGCa -3'
miRNA:   3'- aC-GUCCGCGGUuCuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 81604 0.75 0.358017
Target:  5'- cGCGucuGGuCGCUggGGGGCUccacgCGCGCGCg -3'
miRNA:   3'- aCGU---CC-GCGGuuCUCUGAa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 37162 0.75 0.358017
Target:  5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 4957 0.75 0.358017
Target:  5'- gGCGGGCGCCGGcgcccuGGuAC-UCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUc-----UC-UGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 85399 0.74 0.366023
Target:  5'- gGUAGGCGCCcgcgagcccGAGcACgcgCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGuu-------CUC-UGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 47837 0.74 0.366023
Target:  5'- cGcCGGGCGCCAGccccgccggcGGGGCcUCGCcGCGCa -3'
miRNA:   3'- aC-GUCCGCGGUU----------CUCUGaAGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 54009 0.74 0.366023
Target:  5'- -aCAGGCGCCGccgcGAGcGCUUCGCGCacGCg -3'
miRNA:   3'- acGUCCGCGGUu---CUC-UGAAGCGCG--CG- -5'
23565 5' -57.2 NC_005261.1 + 44211 0.74 0.366023
Target:  5'- cUGCAGGCGgcCCGGGAG----CGCGCGCu -3'
miRNA:   3'- -ACGUCCGC--GGUUCUCugaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 56396 0.74 0.366023
Target:  5'- cGCGGGgGCCcuGGGcgcccugcGCUUCGCgGCGCa -3'
miRNA:   3'- aCGUCCgCGGuuCUC--------UGAAGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 118944 0.74 0.36926
Target:  5'- cGCGGGCGUCGucgcguacGAGACgcuggcguacccgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCGGUu-------CUCUGaa-----------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 22182 0.74 0.373333
Target:  5'- cGCgGGGCGCCAAGgccaucguggcgcAGACcaUGCGCGCc -3'
miRNA:   3'- aCG-UCCGCGGUUC-------------UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 110528 0.74 0.374152
Target:  5'- cUGCGGG-GCgCAGGAGGg--CGCGCGCa -3'
miRNA:   3'- -ACGUCCgCG-GUUCUCUgaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 32273 0.74 0.374152
Target:  5'- cGCuGGGCGCCGAGGccaucGACg--GCGCGCu -3'
miRNA:   3'- aCG-UCCGCGGUUCU-----CUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 72511 0.74 0.374152
Target:  5'- aGCGGGCGCCGcauccuccuuGGcGGC-UCGCuGCGCg -3'
miRNA:   3'- aCGUCCGCGGU----------UCuCUGaAGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 42215 0.74 0.382402
Target:  5'- cGCGGGCGCCccgccgcGAG-CUccgcCGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGuu-----CUCuGAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11470 0.74 0.382402
Target:  5'- aGCGGGCGCgGAGGGGCggggCGgGgGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUCUGaa--GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 115987 0.74 0.382402
Target:  5'- aGCGGGCGCgGAGGGGCggggCGgGgGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUCUGaa--GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 56717 0.74 0.390772
Target:  5'- cGCcuGGCGCC-GGcGGCggCGCGCGCg -3'
miRNA:   3'- aCGu-CCGCGGuUCuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 87030 0.74 0.390772
Target:  5'- aGCAGcGCGCCcGGGGGCguggcgagcgUCGCcaGCGCg -3'
miRNA:   3'- aCGUC-CGCGGuUCUCUGa---------AGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 91176 0.74 0.390772
Target:  5'- gGCAGcuccCGCC---GGGCUUCGCGCGCu -3'
miRNA:   3'- aCGUCc---GCGGuucUCUGAAGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.