miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 79408 0.76 0.284819
Target:  5'- cGCGGGUGCCuGGAgGACguggCGCgGCGCg -3'
miRNA:   3'- aCGUCCGCGGuUCU-CUGaa--GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 127689 0.76 0.298456
Target:  5'- gGCAGGCGCgCcGGGGGCgacagcgaGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaag-----CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126111 0.75 0.350134
Target:  5'- gGCGGGCGCCAuccuggcgcuAGAG-CUggCGCcGCGCc -3'
miRNA:   3'- aCGUCCGCGGU----------UCUCuGAa-GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 44827 0.75 0.350134
Target:  5'- cGCGGGCGCaCGAcGGGCgagUGCGUGCu -3'
miRNA:   3'- aCGUCCGCG-GUUcUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4957 0.75 0.358017
Target:  5'- gGCGGGCGCCGGcgcccuGGuAC-UCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUc-----UC-UGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 37162 0.75 0.358017
Target:  5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 79272 0.75 0.358017
Target:  5'- cGCGGGCGCCGAGGcGCUgcuggcCGaGCGCu -3'
miRNA:   3'- aCGUCCGCGGUUCUcUGAa-----GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 81604 0.75 0.358017
Target:  5'- cGCGucuGGuCGCUggGGGGCUccacgCGCGCGCg -3'
miRNA:   3'- aCGU---CC-GCGGuuCUCUGAa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 47837 0.74 0.366023
Target:  5'- cGcCGGGCGCCAGccccgccggcGGGGCcUCGCcGCGCa -3'
miRNA:   3'- aC-GUCCGCGGUU----------CUCUGaAGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 118944 0.74 0.36926
Target:  5'- cGCGGGCGUCGucgcguacGAGACgcuggcguacccgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCGGUu-------CUCUGaa-----------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13279 0.75 0.350134
Target:  5'- gUGCGGGCuCCAGGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 71965 0.75 0.342376
Target:  5'- cGCGGGCGCCcGGuGGACg--GCGUGCu -3'
miRNA:   3'- aCGUCCGCGGuUC-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 75866 0.76 0.304051
Target:  5'- cGCAGGCGCgCGAGcugguGGCgcgcgugguggCGCGCGCg -3'
miRNA:   3'- aCGUCCGCG-GUUCu----CUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 34784 0.76 0.312594
Target:  5'- gGCGcGGCgGCCGAccgcGAGGCgcgCGCGCGCg -3'
miRNA:   3'- aCGU-CCG-CGGUU----CUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67982 0.76 0.312594
Target:  5'- cGCGGacaagcGCGCCGAGGucGAgUUUGCGCGCg -3'
miRNA:   3'- aCGUC------CGCGGUUCU--CUgAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 75907 0.76 0.31839
Target:  5'- gUGgAGGCGCUggGGGACcgcggggccgcCGCGCGCc -3'
miRNA:   3'- -ACgUCCGCGGuuCUCUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 66987 0.76 0.319851
Target:  5'- cGCGGGgcucggcugcgcCGCCGAGGGccGCgugCGCGCGCg -3'
miRNA:   3'- aCGUCC------------GCGGUUCUC--UGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 50989 0.75 0.334742
Target:  5'- aGUGGGCGCgAGcGAGGCggUGCGCGUg -3'
miRNA:   3'- aCGUCCGCGgUU-CUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83974 0.75 0.342376
Target:  5'- gUGCGcGGCGCCAGGGcgcGCUgcacaugagCGCGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUUCUc--UGAa--------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 61743 0.75 0.342376
Target:  5'- cGCGaGCGCCGAG-GGCUcgggguccgCGCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUUCuCUGAa--------GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.