miRNA display CGI


Results 41 - 60 of 813 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 37263 0.79 0.213199
Target:  5'- cGCuGGGCGCCuuccacGAGACcgCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCGGuu----CUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 70043 0.79 0.202885
Target:  5'- gGCGGGgGCgAGGGGGCccgcggCGCGCGCg -3'
miRNA:   3'- aCGUCCgCGgUUCUCUGaa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 102747 0.8 0.17014
Target:  5'- gGCGGGUGCCGcggcAGGGACcccgggacgCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGU----UCUCUGaa-------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 6615 0.81 0.15761
Target:  5'- gGCGGGCGCCAGGcGcGCguacgugCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUUCuC-UGaa-----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 52795 0.82 0.121347
Target:  5'- gGC-GGCGCCAacaugucGGAGGCggCGCGCGCg -3'
miRNA:   3'- aCGuCCGCGGU-------UCUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 109927 0.77 0.252887
Target:  5'- cGCGGGCGCCGcgaacgaaGGAGACgacCGCGgcCGCg -3'
miRNA:   3'- aCGUCCGCGGU--------UCUCUGaa-GCGC--GCG- -5'
23565 5' -57.2 NC_005261.1 + 35798 0.77 0.259029
Target:  5'- gGCGGcGCGCCgAGGAGGCggcCGCGCaGCg -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 61743 0.75 0.342376
Target:  5'- cGCGaGCGCCGAG-GGCUcgggguccgCGCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUUCuCUGAa--------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83974 0.75 0.342376
Target:  5'- gUGCGcGGCGCCAGGGcgcGCUgcacaugagCGCGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUUCUc--UGAa--------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 50989 0.75 0.334742
Target:  5'- aGUGGGCGCgAGcGAGGCggUGCGCGUg -3'
miRNA:   3'- aCGUCCGCGgUU-CUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 66987 0.76 0.319851
Target:  5'- cGCGGGgcucggcugcgcCGCCGAGGGccGCgugCGCGCGCg -3'
miRNA:   3'- aCGUCC------------GCGGUUCUC--UGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 75907 0.76 0.31839
Target:  5'- gUGgAGGCGCUggGGGACcgcggggccgcCGCGCGCc -3'
miRNA:   3'- -ACgUCCGCGGuuCUCUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67982 0.76 0.312594
Target:  5'- cGCGGacaagcGCGCCGAGGucGAgUUUGCGCGCg -3'
miRNA:   3'- aCGUC------CGCGGUUCU--CUgAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 34784 0.76 0.312594
Target:  5'- gGCGcGGCgGCCGAccgcGAGGCgcgCGCGCGCg -3'
miRNA:   3'- aCGU-CCG-CGGUU----CUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 75866 0.76 0.304051
Target:  5'- cGCAGGCGCgCGAGcugguGGCgcgcgugguggCGCGCGCg -3'
miRNA:   3'- aCGUCCGCG-GUUCu----CUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 127689 0.76 0.298456
Target:  5'- gGCAGGCGCgCcGGGGGCgacagcgaGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaag-----CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 79408 0.76 0.284819
Target:  5'- cGCGGGUGCCuGGAgGACguggCGCgGCGCg -3'
miRNA:   3'- aCGUCCGCGGuUCU-CUGaa--GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 21701 0.76 0.284819
Target:  5'- cGCGGGCGCgGAGcggcGGGCcUCGCGcCGCc -3'
miRNA:   3'- aCGUCCGCGgUUC----UCUGaAGCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 37333 0.76 0.282816
Target:  5'- gGCGGuGCGCggcgaggccgcguaCGAGGGGCUgCGCGCGCu -3'
miRNA:   3'- aCGUC-CGCG--------------GUUCUCUGAaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67307 0.77 0.259029
Target:  5'- cGCAGGCGCUGGagcucgcgcGGGACgUgGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGUU---------CUCUGaAgCGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.