miRNA display CGI


Results 41 - 60 of 813 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 7375 0.72 0.490199
Target:  5'- cGC-GGCGCCcGGccGGGCg-CGCGCGCa -3'
miRNA:   3'- aCGuCCGCGGuUC--UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 7584 0.7 0.610115
Target:  5'- aGCAGcGCGUCGGcGAG-CgcaCGCGCGCc -3'
miRNA:   3'- aCGUC-CGCGGUU-CUCuGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 7630 0.66 0.807257
Target:  5'- cGCAGGCaaagacggGCCAGGcgcgGGGC--CGCGCGg -3'
miRNA:   3'- aCGUCCG--------CGGUUC----UCUGaaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 7952 0.67 0.761137
Target:  5'- gUGCGGGCGUgGcGGGGg--CGCGCGg -3'
miRNA:   3'- -ACGUCCGCGgUuCUCUgaaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 8066 0.69 0.671655
Target:  5'- cUGCcGGCGCCGcugacgguGGAGGacgUgGUGCGCu -3'
miRNA:   3'- -ACGuCCGCGGU--------UCUCUga-AgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 8801 0.67 0.798318
Target:  5'- cUGCAGcCGCCGAG-GGCUUgaagGgGCGCc -3'
miRNA:   3'- -ACGUCcGCGGUUCuCUGAAg---CgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 8936 0.7 0.620376
Target:  5'- cGCgGGGCGCCGGGggcGGGCggggCG-GCGCg -3'
miRNA:   3'- aCG-UCCGCGGUUC---UCUGaa--GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 9441 0.68 0.712142
Target:  5'- cGCGGGC-CCGGGcgcccAGACaacgGCGCGCa -3'
miRNA:   3'- aCGUCCGcGGUUC-----UCUGaag-CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 9625 0.66 0.807257
Target:  5'- gGCAGGCGgggguGGGGGCUggGUGgGCg -3'
miRNA:   3'- aCGUCCGCggu--UCUCUGAagCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 9844 0.66 0.840515
Target:  5'- aUGC-GGCGCgAGGAagcgaugGACUUCuggaGCGCGg -3'
miRNA:   3'- -ACGuCCGCGgUUCU-------CUGAAG----CGCGCg -5'
23565 5' -57.2 NC_005261.1 + 10478 0.67 0.796512
Target:  5'- aGCAGGCcgGCCcgcugcaccGGCuUUUGCGCGCg -3'
miRNA:   3'- aCGUCCG--CGGuucu-----CUG-AAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 10970 0.67 0.801912
Target:  5'- gGCGGGCccGCCGuagcgcuggagggggGGgaAGGCUUuuucgaCGCGCGCg -3'
miRNA:   3'- aCGUCCG--CGGU---------------UC--UCUGAA------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11099 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11470 0.74 0.382402
Target:  5'- aGCGGGCGCgGAGGGGCggggCGgGgGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUCUGaa--GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 11594 0.68 0.722116
Target:  5'- -aCAGGCGCauuuucuggcAGAG-CUgCGCGCGCg -3'
miRNA:   3'- acGUCCGCGgu--------UCUCuGAaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11720 0.69 0.691999
Target:  5'- cGCGGGCGcCCAGGcAGACcgccUGCG-GCa -3'
miRNA:   3'- aCGUCCGC-GGUUC-UCUGaa--GCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 11751 0.67 0.761137
Target:  5'- cUGguGGCGgcgcgguacuaCCGcGAGGCga-GCGCGCu -3'
miRNA:   3'- -ACguCCGC-----------GGUuCUCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11937 0.68 0.74182
Target:  5'- gGCGGcccGCGCCGcGGcGGCUcgcccggCGCGCGCu -3'
miRNA:   3'- aCGUC---CGCGGUuCU-CUGAa------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 12077 0.66 0.807257
Target:  5'- aGCGGcguccGCGCCGGGGcGGCUcaaaggCGCgGCGCc -3'
miRNA:   3'- aCGUC-----CGCGGUUCU-CUGAa-----GCG-CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.