miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 4391 0.66 0.816036
Target:  5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4460 0.7 0.630646
Target:  5'- cGCacgaGGGCGUgGAGgcacgGGGCgucgaUCGCGCGCg -3'
miRNA:   3'- aCG----UCCGCGgUUC-----UCUGa----AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4479 0.69 0.650155
Target:  5'- cGCGcGGCGCCGcGgcguagccugcgcGGGCcccagUCGCGCGCc -3'
miRNA:   3'- aCGU-CCGCGGUuC-------------UCUGa----AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4526 0.68 0.712142
Target:  5'- cGCGGGCGCCGc--GGCga-GgGCGCc -3'
miRNA:   3'- aCGUCCGCGGUucuCUGaagCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4566 0.7 0.620376
Target:  5'- cGUuGGCGCC-GGAGGCgagcaCGCaGCGCu -3'
miRNA:   3'- aCGuCCGCGGuUCUCUGaa---GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 4869 0.69 0.651181
Target:  5'- cGCAGGCaGCCGaagcccugcgcGGcAGcGCcgCGCGCGCg -3'
miRNA:   3'- aCGUCCG-CGGU-----------UC-UC-UGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4957 0.75 0.358017
Target:  5'- gGCGGGCGCCGGcgcccuGGuAC-UCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUc-----UC-UGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5074 0.67 0.798318
Target:  5'- gGCGGcGaCGCCGAcGGcGGCga-GCGCGCa -3'
miRNA:   3'- aCGUC-C-GCGGUU-CU-CUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5126 0.71 0.559203
Target:  5'- cGCGGGCgGCCcgccGGCgcUCGCGCGCc -3'
miRNA:   3'- aCGUCCG-CGGuucuCUGa-AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5369 0.68 0.751531
Target:  5'- gGCAGGCGC----AGGCUgugccCGUGCGUg -3'
miRNA:   3'- aCGUCCGCGguucUCUGAa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5410 0.77 0.252887
Target:  5'- cGCGGGCGCCGcgaacgaaGGAGACgacCGCGgcCGCg -3'
miRNA:   3'- aCGUCCGCGGU--------UCUCUGaa-GCGC--GCG- -5'
23565 5' -57.2 NC_005261.1 + 5515 0.73 0.425423
Target:  5'- gGCAgcGGCGgCGAGGccgccGGCUUCGgCGCGCa -3'
miRNA:   3'- aCGU--CCGCgGUUCU-----CUGAAGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5579 0.66 0.824647
Target:  5'- aUGgGGGCGCCGAGGG----CGCcCGCc -3'
miRNA:   3'- -ACgUCCGCGGUUCUCugaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 5723 0.7 0.610115
Target:  5'- cGCggagAGGcCGgCGGGAGAag-CGCGCGCg -3'
miRNA:   3'- aCG----UCC-GCgGUUCUCUgaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5778 0.68 0.702101
Target:  5'- cGCggaGGGCgGCCGAGGGGCa-CGCGCu- -3'
miRNA:   3'- aCG---UCCG-CGGUUCUCUGaaGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 6405 0.73 0.434368
Target:  5'- gGCGGGCGCCGcgucaAGcGGCg--GCGCGCc -3'
miRNA:   3'- aCGUCCGCGGU-----UCuCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 6444 0.68 0.722116
Target:  5'- gGCGGGCGCgGcgucGGGGCccagCGgCGCGCc -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGaa--GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 6615 0.81 0.15761
Target:  5'- gGCGGGCGCCAGGcGcGCguacgugCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUUCuC-UGaa-----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 6779 0.66 0.824647
Target:  5'- gGgAGGCGCCcgcGAGGCg-CG-GCGCa -3'
miRNA:   3'- aCgUCCGCGGuu-CUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 7028 0.69 0.66143
Target:  5'- cGCGGGCGCgCcGGcGGCgacCGCGcCGCg -3'
miRNA:   3'- aCGUCCGCG-GuUCuCUGaa-GCGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.