miRNA display CGI


Results 1 - 20 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 447 0.67 0.79197
Target:  5'- cGCGGGCGgcggggcCCGGGGGcgcgccccgcaccccGCcccCGCGCGCg -3'
miRNA:   3'- aCGUCCGC-------GGUUCUC---------------UGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 549 0.66 0.816036
Target:  5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3'
miRNA:   3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 1319 0.67 0.761137
Target:  5'- gGCAcGCGCUccGGGACgcCGCcGCGCc -3'
miRNA:   3'- aCGUcCGCGGuuCUCUGaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 1518 0.69 0.651181
Target:  5'- cGuCGGGCGCCA----GCUccagCGCGCGCc -3'
miRNA:   3'- aC-GUCCGCGGUucucUGAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 1734 0.74 0.407867
Target:  5'- aGCAGGCGUCGGcgccGAGcugcucgcuGCUgccCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUU----CUC---------UGAa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 1849 0.67 0.77439
Target:  5'- cGCgaAGGCGCCGGGcccgaAGACgcgCcgcgaggccagcacgGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGUUC-----UCUGaa-G---------------CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 1901 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 2221 0.66 0.807257
Target:  5'- aGCAGGUG-CGAGAGcc--CGCcGCGCa -3'
miRNA:   3'- aCGUCCGCgGUUCUCugaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 2532 0.68 0.74182
Target:  5'- gGCAGGUGgC--GAGGCUUagcCGCcGCGCg -3'
miRNA:   3'- aCGUCCGCgGuuCUCUGAA---GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 2645 0.71 0.546141
Target:  5'- aGCAcGGCGCCGgccguggccacgauGGGGucCUUgGUGCGCa -3'
miRNA:   3'- aCGU-CCGCGGU--------------UCUCu-GAAgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 2652 0.66 0.848594
Target:  5'- gGCGGGCagcggcggcucccGCCGcgcuGGGGACccggCGgCGCGCc -3'
miRNA:   3'- aCGUCCG-------------CGGU----UCUCUGaa--GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 3360 0.71 0.529212
Target:  5'- aGCAGGgGCCcgcGGGGGCg-CGgGCGCc -3'
miRNA:   3'- aCGUCCgCGGu--UCUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 3446 0.7 0.579461
Target:  5'- gGCGGGCGCgCGGGccGCcgCGCcGCGCg -3'
miRNA:   3'- aCGUCCGCG-GUUCucUGaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 3561 0.72 0.490199
Target:  5'- gGCGcGGCGCCGcuaAGGCg-CGCGCGCu -3'
miRNA:   3'- aCGU-CCGCGGUuc-UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 3676 0.7 0.58863
Target:  5'- cGC-GGCGCCGcccagcaAGGGGCggucacgUCuGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-------UCUCUGa------AG-CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 3681 0.66 0.83057
Target:  5'- gGCAGGCcgcggcccgcugcaGCCGAGAGcaccgggaGCUcagaCGCGcCGCu -3'
miRNA:   3'- aCGUCCG--------------CGGUUCUC--------UGAa---GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 3922 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 4142 0.67 0.779995
Target:  5'- cGcCGGcGCGCCGAGAG-C-UCGCacaugagccGCGCg -3'
miRNA:   3'- aC-GUC-CGCGGUUCUCuGaAGCG---------CGCG- -5'
23565 5' -57.2 NC_005261.1 + 4171 0.69 0.681848
Target:  5'- cUGCAGGUccggGCCcgcGAG-CUUCGCGCucuGCa -3'
miRNA:   3'- -ACGUCCG----CGGuu-CUCuGAAGCGCG---CG- -5'
23565 5' -57.2 NC_005261.1 + 4340 0.71 0.55618
Target:  5'- aGCAGcGCGCCGcgggcuugcgcAGAccacagguaggcgcGGCagUCGCGCGCg -3'
miRNA:   3'- aCGUC-CGCGGU-----------UCU--------------CUGa-AGCGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.