Results 1 - 20 of 813 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 447 | 0.67 | 0.79197 |
Target: 5'- cGCGGGCGgcggggcCCGGGGGcgcgccccgcaccccGCcccCGCGCGCg -3' miRNA: 3'- aCGUCCGC-------GGUUCUC---------------UGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 549 | 0.66 | 0.816036 |
Target: 5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3' miRNA: 3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 1319 | 0.67 | 0.761137 |
Target: 5'- gGCAcGCGCUccGGGACgcCGCcGCGCc -3' miRNA: 3'- aCGUcCGCGGuuCUCUGaaGCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 1518 | 0.69 | 0.651181 |
Target: 5'- cGuCGGGCGCCA----GCUccagCGCGCGCc -3' miRNA: 3'- aC-GUCCGCGGUucucUGAa---GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 1734 | 0.74 | 0.407867 |
Target: 5'- aGCAGGCGUCGGcgccGAGcugcucgcuGCUgccCGCGCGCg -3' miRNA: 3'- aCGUCCGCGGUU----CUC---------UGAa--GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 1849 | 0.67 | 0.77439 |
Target: 5'- cGCgaAGGCGCCGGGcccgaAGACgcgCcgcgaggccagcacgGCGCGCg -3' miRNA: 3'- aCG--UCCGCGGUUC-----UCUGaa-G---------------CGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 1901 | 0.66 | 0.849391 |
Target: 5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3' miRNA: 3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 2221 | 0.66 | 0.807257 |
Target: 5'- aGCAGGUG-CGAGAGcc--CGCcGCGCa -3' miRNA: 3'- aCGUCCGCgGUUCUCugaaGCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 2532 | 0.68 | 0.74182 |
Target: 5'- gGCAGGUGgC--GAGGCUUagcCGCcGCGCg -3' miRNA: 3'- aCGUCCGCgGuuCUCUGAA---GCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 2645 | 0.71 | 0.546141 |
Target: 5'- aGCAcGGCGCCGgccguggccacgauGGGGucCUUgGUGCGCa -3' miRNA: 3'- aCGU-CCGCGGU--------------UCUCu-GAAgCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 2652 | 0.66 | 0.848594 |
Target: 5'- gGCGGGCagcggcggcucccGCCGcgcuGGGGACccggCGgCGCGCc -3' miRNA: 3'- aCGUCCG-------------CGGU----UCUCUGaa--GC-GCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3360 | 0.71 | 0.529212 |
Target: 5'- aGCAGGgGCCcgcGGGGGCg-CGgGCGCc -3' miRNA: 3'- aCGUCCgCGGu--UCUCUGaaGCgCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3446 | 0.7 | 0.579461 |
Target: 5'- gGCGGGCGCgCGGGccGCcgCGCcGCGCg -3' miRNA: 3'- aCGUCCGCG-GUUCucUGaaGCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3561 | 0.72 | 0.490199 |
Target: 5'- gGCGcGGCGCCGcuaAGGCg-CGCGCGCu -3' miRNA: 3'- aCGU-CCGCGGUuc-UCUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3676 | 0.7 | 0.58863 |
Target: 5'- cGC-GGCGCCGcccagcaAGGGGCggucacgUCuGCGCGCc -3' miRNA: 3'- aCGuCCGCGGU-------UCUCUGa------AG-CGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3681 | 0.66 | 0.83057 |
Target: 5'- gGCAGGCcgcggcccgcugcaGCCGAGAGcaccgggaGCUcagaCGCGcCGCu -3' miRNA: 3'- aCGUCCG--------------CGGUUCUC--------UGAa---GCGC-GCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3922 | 0.66 | 0.841332 |
Target: 5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3' miRNA: 3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 4142 | 0.67 | 0.779995 |
Target: 5'- cGcCGGcGCGCCGAGAG-C-UCGCacaugagccGCGCg -3' miRNA: 3'- aC-GUC-CGCGGUUCUCuGaAGCG---------CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 4171 | 0.69 | 0.681848 |
Target: 5'- cUGCAGGUccggGCCcgcGAG-CUUCGCGCucuGCa -3' miRNA: 3'- -ACGUCCG----CGGuu-CUCuGAAGCGCG---CG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 4340 | 0.71 | 0.55618 |
Target: 5'- aGCAGcGCGCCGcgggcuugcgcAGAccacagguaggcgcGGCagUCGCGCGCg -3' miRNA: 3'- aCGUC-CGCGGU-----------UCU--------------CUGa-AGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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