miRNA display CGI


Results 1 - 20 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 138130 0.67 0.79197
Target:  5'- cGCGGGCGgcggggcCCGGGGGcgcgccccgcaccccGCcccCGCGCGCg -3'
miRNA:   3'- aCGUCCGC-------GGUUCUC---------------UGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 137061 0.68 0.702101
Target:  5'- gGCAGGCGC--GGAGg---CGCGgGCa -3'
miRNA:   3'- aCGUCCGCGguUCUCugaaGCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 136897 0.69 0.671655
Target:  5'- gUGCAGGCGCgGcgcGGcGGCgucccggagCGCGUGCc -3'
miRNA:   3'- -ACGUCCGCGgU---UCuCUGaa-------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136809 0.68 0.751531
Target:  5'- gGCGGGCucguaGCCGuAGAcGGCgccccCGCGCGUg -3'
miRNA:   3'- aCGUCCG-----CGGU-UCU-CUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136788 0.69 0.691999
Target:  5'- cGCcgAGGCGCCGccgcuggugcuGGAGGCgggCGC-CGCc -3'
miRNA:   3'- aCG--UCCGCGGU-----------UCUCUGaa-GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 136636 0.67 0.789227
Target:  5'- gGCGGccagccaccGCGCCGccaaccgcuGGGGGCUcgGCGCGCc -3'
miRNA:   3'- aCGUC---------CGCGGU---------UCUCUGAagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136592 0.69 0.66143
Target:  5'- aGCGcGGCGCUggGgcucggggagccGGACUUCGCGgaggGCg -3'
miRNA:   3'- aCGU-CCGCGGuuC------------UCUGAAGCGCg---CG- -5'
23565 5' -57.2 NC_005261.1 + 136583 0.72 0.480653
Target:  5'- gGCGGGCGC--AGAGACgcccggCGCaGCGUg -3'
miRNA:   3'- aCGUCCGCGguUCUCUGaa----GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 136443 0.76 0.322789
Target:  5'- cGCGGGCGUCGcagGGgcacgcggcagccccAGAC-UCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGU---UC---------------UCUGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136374 0.7 0.59987
Target:  5'- cGCGGcGCGUCuucGGGcccggcgcCUUCGCGCGCg -3'
miRNA:   3'- aCGUC-CGCGGuu-CUCu-------GAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136317 0.71 0.56931
Target:  5'- cGCAGuGCGCCGcgcgcuggccuGAG-CggCGCGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUu----------CUCuGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 136248 0.66 0.841332
Target:  5'- gGCAGaGgGCCGAGAGAaggCaCGCGa -3'
miRNA:   3'- aCGUC-CgCGGUUCUCUgaaGcGCGCg -5'
23565 5' -57.2 NC_005261.1 + 135656 0.67 0.764948
Target:  5'- cGCGGGCGCgGgcggcccucgcucgaGGAG-CUcugCGCcGCGCg -3'
miRNA:   3'- aCGUCCGCGgU---------------UCUCuGAa--GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 135456 0.79 0.213199
Target:  5'- cGCGGGCGCUgcGGGACcUCGUacuGCGCg -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGaAGCG---CGCG- -5'
23565 5' -57.2 NC_005261.1 + 135132 0.66 0.833082
Target:  5'- cGCAGcGCGgCGggGGAGACgaCGC-CGCc -3'
miRNA:   3'- aCGUC-CGCgGU--UCUCUGaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 134699 0.67 0.798318
Target:  5'- cGCuGcGCGCCGAGGcGGCcgC-CGCGCu -3'
miRNA:   3'- aCGuC-CGCGGUUCU-CUGaaGcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 134518 0.66 0.824647
Target:  5'- aGCcuGCGCCugcAGcuGCUggGCGCGCa -3'
miRNA:   3'- aCGucCGCGGu--UCucUGAagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 134476 0.73 0.416589
Target:  5'- cGCgAGGCGCU-AGAGGCggCGCgGUGCg -3'
miRNA:   3'- aCG-UCCGCGGuUCUCUGaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 134319 0.66 0.807257
Target:  5'- gGCcGGCGCCGgcGGcgcGGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU--UC---UCUGaa-GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 133840 0.68 0.74182
Target:  5'- cGCGuGcGCGCCGu--GGCcggCGCGCGCg -3'
miRNA:   3'- aCGU-C-CGCGGUucuCUGaa-GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.