Results 1 - 20 of 813 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 549 | 0.66 | 0.816036 |
Target: 5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3' miRNA: 3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 22283 | 0.66 | 0.816036 |
Target: 5'- gUGCuGGGCGCguAcGAGuaccCUgcccCGCGCGCg -3' miRNA: 3'- -ACG-UCCGCGguU-CUCu---GAa---GCGCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 33883 | 0.66 | 0.815166 |
Target: 5'- cGCGGGCGgCGcugcgcgacggccGGccGCUggaCGCGCGCg -3' miRNA: 3'- aCGUCCGCgGU-------------UCucUGAa--GCGCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 43814 | 0.66 | 0.816036 |
Target: 5'- gGC-GGCGCCGc-GGACgUCGCGCc- -3' miRNA: 3'- aCGuCCGCGGUucUCUGaAGCGCGcg -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 20740 | 0.66 | 0.807257 |
Target: 5'- gGCGGGCGCaAGGuAGAag-CGCagcaGCGCg -3' miRNA: 3'- aCGUCCGCGgUUC-UCUgaaGCG----CGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 24741 | 0.66 | 0.807257 |
Target: 5'- cGCAGcGCGCgCAucAGcGGCaggUUCGgGCGCa -3' miRNA: 3'- aCGUC-CGCG-GU--UCuCUG---AAGCgCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 77945 | 0.66 | 0.807257 |
Target: 5'- cUGCGGGcCGCgGGGgcGGACccCGgGCGCc -3' miRNA: 3'- -ACGUCC-GCGgUUC--UCUGaaGCgCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 9704 | 0.66 | 0.816036 |
Target: 5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3' miRNA: 3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 114142 | 0.66 | 0.807257 |
Target: 5'- gGCAGGCGgggguGGGGGCUggGUGgGCg -3' miRNA: 3'- aCGUCCGCggu--UCUCUGAagCGCgCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 23036 | 0.66 | 0.807257 |
Target: 5'- cGCacGGGCGCUggGccguGCUgaagCGCGUGCc -3' miRNA: 3'- aCG--UCCGCGGuuCuc--UGAa---GCGCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 31696 | 0.66 | 0.807257 |
Target: 5'- cGCGGcCGCCGccgaGGAGGCggUGCugGCGCu -3' miRNA: 3'- aCGUCcGCGGU----UCUCUGaaGCG--CGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 29169 | 0.66 | 0.807257 |
Target: 5'- cGCcgAGGCGCCGcuGGGCUaccuggCGgcCGCGCg -3' miRNA: 3'- aCG--UCCGCGGUucUCUGAa-----GC--GCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 79140 | 0.66 | 0.816036 |
Target: 5'- cUGCGaGCGCgAGGGcgcGGCgcaccCGCGCGCg -3' miRNA: 3'- -ACGUcCGCGgUUCU---CUGaa---GCGCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 106739 | 0.66 | 0.807257 |
Target: 5'- aGCAGGUG-CGAGAGcc--CGCcGCGCa -3' miRNA: 3'- aCGUCCGCgGUUCUCugaaGCG-CGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 82010 | 0.66 | 0.816036 |
Target: 5'- cUGguGGCGCUuGGGGGC--CGCGacgGCg -3' miRNA: 3'- -ACguCCGCGGuUCUCUGaaGCGCg--CG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 13675 | 0.66 | 0.816036 |
Target: 5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3' miRNA: 3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 7630 | 0.66 | 0.807257 |
Target: 5'- cGCAGGCaaagacggGCCAGGcgcgGGGC--CGCGCGg -3' miRNA: 3'- aCGUCCG--------CGGUUC----UCUGaaGCGCGCg -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 108908 | 0.66 | 0.816036 |
Target: 5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3' miRNA: 3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 134319 | 0.66 | 0.807257 |
Target: 5'- gGCcGGCGCCGgcGGcgcGGGCgccCGCGcCGCg -3' miRNA: 3'- aCGuCCGCGGU--UC---UCUGaa-GCGC-GCG- -5' |
|||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 67095 | 0.66 | 0.816036 |
Target: 5'- gGC-GGCGCuUGAGAG-CgucgUgGCGCGCg -3' miRNA: 3'- aCGuCCGCG-GUUCUCuGa---AgCGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home