miRNA display CGI


Results 1 - 20 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 126402 1.11 0.001447
Target:  5'- gUGCAGGCGCCAAGAGACUUCGCGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUCUCUGAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 95762 0.85 0.081797
Target:  5'- cGgGGGCGCCGGGAG-CcUCGCGCGCu -3'
miRNA:   3'- aCgUCCGCGGUUCUCuGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 54663 0.83 0.10983
Target:  5'- cGCGGGCGCCGcGGGcacgcccgccgaguuCUUCGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGUuCUCu--------------GAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 52795 0.82 0.121347
Target:  5'- gGC-GGCGCCAacaugucGGAGGCggCGCGCGCg -3'
miRNA:   3'- aCGuCCGCGGU-------UCUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 63024 0.81 0.14592
Target:  5'- cGCGGGCGCCGGcgcccgcggcGAGGCggUCGCGCaGCa -3'
miRNA:   3'- aCGUCCGCGGUU----------CUCUGa-AGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 6615 0.81 0.15761
Target:  5'- gGCGGGCGCCAGGcGcGCguacgugCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUUCuC-UGaa-----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 102747 0.8 0.17014
Target:  5'- gGCGGGUGCCGcggcAGGGACcccgggacgCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGU----UCUCUGaa-------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 37263 0.79 0.213199
Target:  5'- cGCuGGGCGCCuuccacGAGACcgCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCGGuu----CUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 85903 0.79 0.213199
Target:  5'- gGCGGGCGCCAAG-GACggCGaggaGUGCg -3'
miRNA:   3'- aCGUCCGCGGUUCuCUGaaGCg---CGCG- -5'
23565 5' -57.2 NC_005261.1 + 70043 0.79 0.202885
Target:  5'- gGCGGGgGCgAGGGGGCccgcggCGCGCGCg -3'
miRNA:   3'- aCGUCCgCGgUUCUCUGaa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 135456 0.79 0.213199
Target:  5'- cGCGGGCGCUgcGGGACcUCGUacuGCGCg -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGaAGCG---CGCG- -5'
23565 5' -57.2 NC_005261.1 + 102964 0.79 0.213199
Target:  5'- cGCGGGCGCCGc-GGGCUccgccgcCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUucUCUGAa------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 79734 0.78 0.218523
Target:  5'- cGCGGGCGCCAaaAGcGGC--CGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGU--UCuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 33964 0.78 0.229511
Target:  5'- cGCAGcCGCCGAGAccgcGGCgcUCGCGCGCg -3'
miRNA:   3'- aCGUCcGCGGUUCU----CUGa-AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 36393 0.78 0.229511
Target:  5'- gGCGGGCGCgCGgcGGAGAUcagcCGCGCGCu -3'
miRNA:   3'- aCGUCCGCG-GU--UCUCUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 34992 0.78 0.229511
Target:  5'- cGCGGGCGCgCGgacggcGGAgGACUgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 89294 0.78 0.235179
Target:  5'- gGCGGGCGCCGucGAGACagCG-GCGCu -3'
miRNA:   3'- aCGUCCGCGGUu-CUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 61187 0.78 0.240963
Target:  5'- cGCGGuCGCCGAG-GGCcgCGCGCGCg -3'
miRNA:   3'- aCGUCcGCGGUUCuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 129565 0.78 0.218523
Target:  5'- gGCGGGCGUagaggAGGAGGCggcCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGg----UUCUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 88806 0.78 0.240963
Target:  5'- aGCAGGaCGCCGGcggcGGGGCggcggCGCGCGCc -3'
miRNA:   3'- aCGUCC-GCGGUU----CUCUGaa---GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.