miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 89294 0.78 0.235179
Target:  5'- gGCGGGCGCCGucGAGACagCG-GCGCu -3'
miRNA:   3'- aCGUCCGCGGUu-CUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 61187 0.78 0.240963
Target:  5'- cGCGGuCGCCGAG-GGCcgCGCGCGCg -3'
miRNA:   3'- aCGUCcGCGGUUCuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 74761 0.77 0.25841
Target:  5'- gGCAGcGCGCCAcaggcgcGGAGGuCgaCGCGCGCa -3'
miRNA:   3'- aCGUC-CGCGGU-------UCUCU-GaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 80064 0.77 0.265293
Target:  5'- gGCGGGCGCgGggggcgugGGGGACgcggaccggCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGgU--------UCUCUGaa-------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 113218 0.77 0.271678
Target:  5'- gGCuGcGCGCCGuucGAgGACUUUGCGCGCa -3'
miRNA:   3'- aCGuC-CGCGGUu--CU-CUGAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 132628 0.77 0.278187
Target:  5'- cGCuGGCGCCGAG-GACg-CGgGCGCg -3'
miRNA:   3'- aCGuCCGCGGUUCuCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 44486 0.77 0.252887
Target:  5'- cGCGGGcCGCCGAGuacGAag-CGCGCGCu -3'
miRNA:   3'- aCGUCC-GCGGUUCu--CUgaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 109927 0.77 0.252887
Target:  5'- cGCGGGCGCCGcgaacgaaGGAGACgacCGCGgcCGCg -3'
miRNA:   3'- aCGUCCGCGGU--------UCUCUGaa-GCGC--GCG- -5'
23565 5' -57.2 NC_005261.1 + 35798 0.77 0.259029
Target:  5'- gGCGGcGCGCCgAGGAGGCggcCGCGCaGCg -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 67307 0.77 0.259029
Target:  5'- cGCAGGCGCUGGagcucgcgcGGGACgUgGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGUU---------CUCUGaAgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 5410 0.77 0.252887
Target:  5'- cGCGGGCGCCGcgaacgaaGGAGACgacCGCGgcCGCg -3'
miRNA:   3'- aCGUCCGCGGU--------UCUCUGaa-GCGC--GCG- -5'
23565 5' -57.2 NC_005261.1 + 66987 0.76 0.319851
Target:  5'- cGCGGGgcucggcugcgcCGCCGAGGGccGCgugCGCGCGCg -3'
miRNA:   3'- aCGUCC------------GCGGUUCUC--UGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 127689 0.76 0.298456
Target:  5'- gGCAGGCGCgCcGGGGGCgacagcgaGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaag-----CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 37333 0.76 0.282816
Target:  5'- gGCGGuGCGCggcgaggccgcguaCGAGGGGCUgCGCGCGCu -3'
miRNA:   3'- aCGUC-CGCG--------------GUUCUCUGAaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 79408 0.76 0.284819
Target:  5'- cGCGGGUGCCuGGAgGACguggCGCgGCGCg -3'
miRNA:   3'- aCGUCCGCGGuUCU-CUGaa--GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 93784 0.76 0.305462
Target:  5'- aGCAGGUGCCcccGGGACgccgcgccgcCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGuu-CUCUGaa--------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 75866 0.76 0.304051
Target:  5'- cGCAGGCGCgCGAGcugguGGCgcgcgugguggCGCGCGCg -3'
miRNA:   3'- aCGUCCGCG-GUUCu----CUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 34784 0.76 0.312594
Target:  5'- gGCGcGGCgGCCGAccgcGAGGCgcgCGCGCGCg -3'
miRNA:   3'- aCGU-CCG-CGGUU----CUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67982 0.76 0.312594
Target:  5'- cGCGGacaagcGCGCCGAGGucGAgUUUGCGCGCg -3'
miRNA:   3'- aCGUC------CGCGGUUCU--CUgAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 75907 0.76 0.31839
Target:  5'- gUGgAGGCGCUggGGGACcgcggggccgcCGCGCGCc -3'
miRNA:   3'- -ACgUCCGCGGuuCUCUGaa---------GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.