miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 26038 0.66 0.833082
Target:  5'- aGUAGGUagcagcugGCCAGcGAG-CccCGCGCGCg -3'
miRNA:   3'- aCGUCCG--------CGGUU-CUCuGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 108198 0.66 0.83057
Target:  5'- gGCAGGCcgcggcccgcugcaGCCGAGAGcaccgggaGCUcagaCGCGcCGCu -3'
miRNA:   3'- aCGUCCG--------------CGGUUCUC--------UGAa---GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 62362 0.66 0.816036
Target:  5'- cGCGcccacGGCGCCGucGGGGccgccgucgGCgcCGCGCGCc -3'
miRNA:   3'- aCGU-----CCGCGGU--UCUC---------UGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 71100 0.66 0.823794
Target:  5'- -aCGGGCGCCGcggucGGGccgccgcACUgCGCGCGCc -3'
miRNA:   3'- acGUCCGCGGUu----CUC-------UGAaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13675 0.66 0.816036
Target:  5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 50592 0.66 0.824647
Target:  5'- cGCGGGCucaCCGuGGAGGCggCGUucGCGCc -3'
miRNA:   3'- aCGUCCGc--GGU-UCUCUGaaGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 109775 0.66 0.828042
Target:  5'- gGCucGGCccGCCGGGAGACgcCauggccggccgcgguGCGCGCg -3'
miRNA:   3'- aCGu-CCG--CGGUUCUCUGaaG---------------CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 13769 0.66 0.824647
Target:  5'- cGUGGGCGCCccuGAGGGcacccggccccgGCUgguguggCGgCGCGCg -3'
miRNA:   3'- aCGUCCGCGG---UUCUC------------UGAa------GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 95845 0.66 0.823794
Target:  5'- gUGCAGGCGCagcuGGGCcggcaccaguacgUUUGCGCGg -3'
miRNA:   3'- -ACGUCCGCGguucUCUG-------------AAGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 43814 0.66 0.816036
Target:  5'- gGC-GGCGCCGc-GGACgUCGCGCc- -3'
miRNA:   3'- aCGuCCGCGGUucUCUGaAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 22283 0.66 0.816036
Target:  5'- gUGCuGGGCGCguAcGAGuaccCUgcccCGCGCGCg -3'
miRNA:   3'- -ACG-UCCGCGguU-CUCu---GAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106739 0.66 0.807257
Target:  5'- aGCAGGUG-CGAGAGcc--CGCcGCGCa -3'
miRNA:   3'- aCGUCCGCgGUUCUCugaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 19656 0.66 0.833082
Target:  5'- gGCGGcgcGCGCCGccgcgcgcgcGGGcacGGCguccUCGCGCGCg -3'
miRNA:   3'- aCGUC---CGCGGU----------UCU---CUGa---AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 114142 0.66 0.807257
Target:  5'- gGCAGGCGgggguGGGGGCUggGUGgGCg -3'
miRNA:   3'- aCGUCCGCggu--UCUCUGAagCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 79140 0.66 0.816036
Target:  5'- cUGCGaGCGCgAGGGcgcGGCgcaccCGCGCGCg -3'
miRNA:   3'- -ACGUcCGCGgUUCU---CUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 82174 0.66 0.824647
Target:  5'- cGCccaGGGCGCCcccGAacaucGC-UCGCGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuu-CUc----UGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 77945 0.66 0.807257
Target:  5'- cUGCGGGcCGCgGGGgcGGACccCGgGCGCc -3'
miRNA:   3'- -ACGUCC-GCGgUUC--UCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 92823 0.66 0.824647
Target:  5'- cGCAGGCGCCGcAGcAGGCa-CGacaGCuGCa -3'
miRNA:   3'- aCGUCCGCGGU-UC-UCUGaaGCg--CG-CG- -5'
23565 5' -57.2 NC_005261.1 + 32079 0.66 0.832246
Target:  5'- cGCGGaGCGgCGAGGcggcaccauguccGGCguugccggCGCGCGCg -3'
miRNA:   3'- aCGUC-CGCgGUUCU-------------CUGaa------GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.