miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 79140 0.66 0.816036
Target:  5'- cUGCGaGCGCgAGGGcgcGGCgcaccCGCGCGCg -3'
miRNA:   3'- -ACGUcCGCGgUUCU---CUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 549 0.66 0.816036
Target:  5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3'
miRNA:   3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 92823 0.66 0.824647
Target:  5'- cGCAGGCGCCGcAGcAGGCa-CGacaGCuGCa -3'
miRNA:   3'- aCGUCCGCGGU-UC-UCUGaaGCg--CG-CG- -5'
23565 5' -57.2 NC_005261.1 + 23036 0.66 0.807257
Target:  5'- cGCacGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCG--UCCGCGGuuCuc--UGAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 110096 0.66 0.824647
Target:  5'- aUGgGGGCGCCGAGGG----CGCcCGCc -3'
miRNA:   3'- -ACgUCCGCGGUUCUCugaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 134319 0.66 0.807257
Target:  5'- gGCcGGCGCCGgcGGcgcGGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU--UC---UCUGaa-GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 33883 0.66 0.815166
Target:  5'- cGCGGGCGgCGcugcgcgacggccGGccGCUggaCGCGCGCg -3'
miRNA:   3'- aCGUCCGCgGU-------------UCucUGAa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67704 0.66 0.823794
Target:  5'- cGCGGGCGCCGccGuGGCgaUCGUccccgugGCGCc -3'
miRNA:   3'- aCGUCCGCGGUu-CuCUGa-AGCG-------CGCG- -5'
23565 5' -57.2 NC_005261.1 + 7630 0.66 0.807257
Target:  5'- cGCAGGCaaagacggGCCAGGcgcgGGGC--CGCGCGg -3'
miRNA:   3'- aCGUCCG--------CGGUUC----UCUGaaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 43814 0.66 0.816036
Target:  5'- gGC-GGCGCCGc-GGACgUCGCGCc- -3'
miRNA:   3'- aCGuCCGCGGUucUCUGaAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 78479 0.66 0.824647
Target:  5'- aUGgAGGCcuGCCugguGGAgGGCggcCGCGCGCc -3'
miRNA:   3'- -ACgUCCG--CGGu---UCU-CUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 31696 0.66 0.807257
Target:  5'- cGCGGcCGCCGccgaGGAGGCggUGCugGCGCu -3'
miRNA:   3'- aCGUCcGCGGU----UCUCUGaaGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 50592 0.66 0.824647
Target:  5'- cGCGGGCucaCCGuGGAGGCggCGUucGCGCc -3'
miRNA:   3'- aCGUCCGc--GGU-UCUCUGaaGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 71100 0.66 0.823794
Target:  5'- -aCGGGCGCCGcggucGGGccgccgcACUgCGCGCGCc -3'
miRNA:   3'- acGUCCGCGGUu----CUC-------UGAaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 26038 0.66 0.833082
Target:  5'- aGUAGGUagcagcugGCCAGcGAG-CccCGCGCGCg -3'
miRNA:   3'- aCGUCCG--------CGGUU-CUCuGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13675 0.66 0.816036
Target:  5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 20740 0.66 0.807257
Target:  5'- gGCGGGCGCaAGGuAGAag-CGCagcaGCGCg -3'
miRNA:   3'- aCGUCCGCGgUUC-UCUgaaGCG----CGCG- -5'
23565 5' -57.2 NC_005261.1 + 62362 0.66 0.816036
Target:  5'- cGCGcccacGGCGCCGucGGGGccgccgucgGCgcCGCGCGCc -3'
miRNA:   3'- aCGU-----CCGCGGU--UCUC---------UGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 67095 0.66 0.816036
Target:  5'- gGC-GGCGCuUGAGAG-CgucgUgGCGCGCg -3'
miRNA:   3'- aCGuCCGCG-GUUCUCuGa---AgCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.