miRNA display CGI


Results 41 - 60 of 813 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 62362 0.66 0.816036
Target:  5'- cGCGcccacGGCGCCGucGGGGccgccgucgGCgcCGCGCGCc -3'
miRNA:   3'- aCGU-----CCGCGGU--UCUC---------UGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 23115 0.66 0.833082
Target:  5'- cGUGGGCGCCGu-GGGCagCGC-CGCc -3'
miRNA:   3'- aCGUCCGCGGUucUCUGaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 33883 0.66 0.815166
Target:  5'- cGCGGGCGgCGcugcgcgacggccGGccGCUggaCGCGCGCg -3'
miRNA:   3'- aCGUCCGCgGU-------------UCucUGAa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 20740 0.66 0.807257
Target:  5'- gGCGGGCGCaAGGuAGAag-CGCagcaGCGCg -3'
miRNA:   3'- aCGUCCGCGgUUC-UCUgaaGCG----CGCG- -5'
23565 5' -57.2 NC_005261.1 + 19735 0.66 0.833082
Target:  5'- aGC-GGCGCCAGGGucCgcaGCGcCGCa -3'
miRNA:   3'- aCGuCCGCGGUUCUcuGaagCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 13675 0.66 0.816036
Target:  5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 65032 0.66 0.833082
Target:  5'- --gAGGCGCCc-GGGGCcaaccucgUCGUGUGCa -3'
miRNA:   3'- acgUCCGCGGuuCUCUGa-------AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 108198 0.66 0.83057
Target:  5'- gGCAGGCcgcggcccgcugcaGCCGAGAGcaccgggaGCUcagaCGCGcCGCu -3'
miRNA:   3'- aCGUCCG--------------CGGUUCUC--------UGAa---GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 133831 0.66 0.833082
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 23036 0.66 0.807257
Target:  5'- cGCacGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCG--UCCGCGGuuCuc--UGAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106739 0.66 0.807257
Target:  5'- aGCAGGUG-CGAGAGcc--CGCcGCGCa -3'
miRNA:   3'- aCGUCCGCgGUUCUCugaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 60580 0.66 0.824647
Target:  5'- cUGCAGGCGCCGGccGuCggCGaugGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUcuCuGaaGCg--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 108439 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 9844 0.66 0.840515
Target:  5'- aUGC-GGCGCgAGGAagcgaugGACUUCuggaGCGCGg -3'
miRNA:   3'- -ACGuCCGCGgUUCU-------CUGAAG----CGCGCg -5'
23565 5' -57.2 NC_005261.1 + 72710 0.66 0.841332
Target:  5'- cGCGGccGCGCUggGuGAUggaGUGCGCc -3'
miRNA:   3'- aCGUC--CGCGGuuCuCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 114142 0.66 0.807257
Target:  5'- gGCAGGCGgggguGGGGGCUggGUGgGCg -3'
miRNA:   3'- aCGUCCGCggu--UCUCUGAagCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 77945 0.66 0.807257
Target:  5'- cUGCGGGcCGCgGGGgcGGACccCGgGCGCc -3'
miRNA:   3'- -ACGUCC-GCGgUUC--UCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 79068 0.66 0.833082
Target:  5'- gGCGGGC-UgGGGcGGGCgcCGCGCGCc -3'
miRNA:   3'- aCGUCCGcGgUUC-UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 24741 0.66 0.807257
Target:  5'- cGCAGcGCGCgCAucAGcGGCaggUUCGgGCGCa -3'
miRNA:   3'- aCGUC-CGCG-GU--UCuCUG---AAGCgCGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.