Results 41 - 60 of 813 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 62362 | 0.66 | 0.816036 |
Target: 5'- cGCGcccacGGCGCCGucGGGGccgccgucgGCgcCGCGCGCc -3' miRNA: 3'- aCGU-----CCGCGGU--UCUC---------UGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 23115 | 0.66 | 0.833082 |
Target: 5'- cGUGGGCGCCGu-GGGCagCGC-CGCc -3' miRNA: 3'- aCGUCCGCGGUucUCUGaaGCGcGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 33883 | 0.66 | 0.815166 |
Target: 5'- cGCGGGCGgCGcugcgcgacggccGGccGCUggaCGCGCGCg -3' miRNA: 3'- aCGUCCGCgGU-------------UCucUGAa--GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 20740 | 0.66 | 0.807257 |
Target: 5'- gGCGGGCGCaAGGuAGAag-CGCagcaGCGCg -3' miRNA: 3'- aCGUCCGCGgUUC-UCUgaaGCG----CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 19735 | 0.66 | 0.833082 |
Target: 5'- aGC-GGCGCCAGGGucCgcaGCGcCGCa -3' miRNA: 3'- aCGuCCGCGGUUCUcuGaagCGC-GCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 13675 | 0.66 | 0.816036 |
Target: 5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3' miRNA: 3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 9704 | 0.66 | 0.816036 |
Target: 5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3' miRNA: 3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 65032 | 0.66 | 0.833082 |
Target: 5'- --gAGGCGCCc-GGGGCcaaccucgUCGUGUGCa -3' miRNA: 3'- acgUCCGCGGuuCUCUGa-------AGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 108198 | 0.66 | 0.83057 |
Target: 5'- gGCAGGCcgcggcccgcugcaGCCGAGAGcaccgggaGCUcagaCGCGcCGCu -3' miRNA: 3'- aCGUCCG--------------CGGUUCUC--------UGAa---GCGC-GCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 133831 | 0.66 | 0.833082 |
Target: 5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3' miRNA: 3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 23036 | 0.66 | 0.807257 |
Target: 5'- cGCacGGGCGCUggGccguGCUgaagCGCGUGCc -3' miRNA: 3'- aCG--UCCGCGGuuCuc--UGAa---GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 106739 | 0.66 | 0.807257 |
Target: 5'- aGCAGGUG-CGAGAGcc--CGCcGCGCa -3' miRNA: 3'- aCGUCCGCgGUUCUCugaaGCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 60580 | 0.66 | 0.824647 |
Target: 5'- cUGCAGGCGCCGGccGuCggCGaugGCGCc -3' miRNA: 3'- -ACGUCCGCGGUUcuCuGaaGCg--CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 108439 | 0.66 | 0.841332 |
Target: 5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3' miRNA: 3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 9844 | 0.66 | 0.840515 |
Target: 5'- aUGC-GGCGCgAGGAagcgaugGACUUCuggaGCGCGg -3' miRNA: 3'- -ACGuCCGCGgUUCU-------CUGAAG----CGCGCg -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 72710 | 0.66 | 0.841332 |
Target: 5'- cGCGGccGCGCUggGuGAUggaGUGCGCc -3' miRNA: 3'- aCGUC--CGCGGuuCuCUGaagCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 114142 | 0.66 | 0.807257 |
Target: 5'- gGCAGGCGgggguGGGGGCUggGUGgGCg -3' miRNA: 3'- aCGUCCGCggu--UCUCUGAagCGCgCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 77945 | 0.66 | 0.807257 |
Target: 5'- cUGCGGGcCGCgGGGgcGGACccCGgGCGCc -3' miRNA: 3'- -ACGUCC-GCGgUUC--UCUGaaGCgCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 79068 | 0.66 | 0.833082 |
Target: 5'- gGCGGGC-UgGGGcGGGCgcCGCGCGCc -3' miRNA: 3'- aCGUCCGcGgUUC-UCUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 24741 | 0.66 | 0.807257 |
Target: 5'- cGCAGcGCGCgCAucAGcGGCaggUUCGgGCGCa -3' miRNA: 3'- aCGUC-CGCG-GU--UCuCUG---AAGCgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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