miRNA display CGI


Results 41 - 60 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 115617 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 6779 0.66 0.824647
Target:  5'- gGgAGGCGCCcgcGAGGCg-CG-GCGCa -3'
miRNA:   3'- aCgUCCGCGGuu-CUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 92823 0.66 0.824647
Target:  5'- cGCAGGCGCCGcAGcAGGCa-CGacaGCuGCa -3'
miRNA:   3'- aCGUCCGCGGU-UC-UCUGaaGCg--CG-CG- -5'
23565 5' -57.2 NC_005261.1 + 65032 0.66 0.833082
Target:  5'- --gAGGCGCCc-GGGGCcaaccucgUCGUGUGCa -3'
miRNA:   3'- acgUCCGCGGuuCUCUGa-------AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 114142 0.66 0.807257
Target:  5'- gGCAGGCGgggguGGGGGCUggGUGgGCg -3'
miRNA:   3'- aCGUCCGCggu--UCUCUGAagCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 108908 0.66 0.816036
Target:  5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 79068 0.66 0.833082
Target:  5'- gGCGGGC-UgGGGcGGGCgcCGCGCGCc -3'
miRNA:   3'- aCGUCCGcGgUUC-UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 41648 0.66 0.841332
Target:  5'- gGCAGaGCGCCGccggggucacGGcGGACauaUUCGCGCuacGCa -3'
miRNA:   3'- aCGUC-CGCGGU----------UC-UCUG---AAGCGCG---CG- -5'
23565 5' -57.2 NC_005261.1 + 110096 0.66 0.824647
Target:  5'- aUGgGGGCGCCGAGGG----CGCcCGCc -3'
miRNA:   3'- -ACgUCCGCGGUUCUCugaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 31696 0.66 0.807257
Target:  5'- cGCGGcCGCCGccgaGGAGGCggUGCugGCGCu -3'
miRNA:   3'- aCGUCcGCGGU----UCUCUGaaGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 134319 0.66 0.807257
Target:  5'- gGCcGGCGCCGgcGGcgcGGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU--UC---UCUGaa-GCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 63437 0.66 0.841332
Target:  5'- cGCGGGCcUCGAuAGGCcggaUGCGCGCg -3'
miRNA:   3'- aCGUCCGcGGUUcUCUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 32079 0.66 0.832246
Target:  5'- cGCGGaGCGgCGAGGcggcaccauguccGGCguugccggCGCGCGCg -3'
miRNA:   3'- aCGUC-CGCgGUUCU-------------CUGaa------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 91639 0.66 0.841332
Target:  5'- cGCA-GUGCCcGGGGcCgugUCGCGCGa -3'
miRNA:   3'- aCGUcCGCGGuUCUCuGa--AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 9704 0.66 0.816036
Target:  5'- aGCAGcacuccagcCGCCAGGAGGCUgccucCGC-CGCc -3'
miRNA:   3'- aCGUCc--------GCGGUUCUCUGAa----GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 13675 0.66 0.816036
Target:  5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 43814 0.66 0.816036
Target:  5'- gGC-GGCGCCGc-GGACgUCGCGCc- -3'
miRNA:   3'- aCGuCCGCGGUucUCUGaAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 128518 0.66 0.833082
Target:  5'- gGCGGaGCGCUgcugcuaggggAGGGGGCggaGCGCGg -3'
miRNA:   3'- aCGUC-CGCGG-----------UUCUCUGaagCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 77945 0.66 0.807257
Target:  5'- cUGCGGGcCGCgGGGgcGGACccCGgGCGCc -3'
miRNA:   3'- -ACGUCC-GCGgUUC--UCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 549 0.66 0.816036
Target:  5'- cUGCacgagGGGCGgUggGGGGCcccggggUCGCGCGg -3'
miRNA:   3'- -ACG-----UCCGCgGuuCUCUGa------AGCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.