Results 41 - 60 of 813 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 37333 | 0.76 | 0.282816 |
Target: 5'- gGCGGuGCGCggcgaggccgcguaCGAGGGGCUgCGCGCGCu -3' miRNA: 3'- aCGUC-CGCG--------------GUUCUCUGAaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 21701 | 0.76 | 0.284819 |
Target: 5'- cGCGGGCGCgGAGcggcGGGCcUCGCGcCGCc -3' miRNA: 3'- aCGUCCGCGgUUC----UCUGaAGCGC-GCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 79408 | 0.76 | 0.284819 |
Target: 5'- cGCGGGUGCCuGGAgGACguggCGCgGCGCg -3' miRNA: 3'- aCGUCCGCGGuUCU-CUGaa--GCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 127689 | 0.76 | 0.298456 |
Target: 5'- gGCAGGCGCgCcGGGGGCgacagcgaGCGCGCc -3' miRNA: 3'- aCGUCCGCG-GuUCUCUGaag-----CGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 75866 | 0.76 | 0.304051 |
Target: 5'- cGCAGGCGCgCGAGcugguGGCgcgcgugguggCGCGCGCg -3' miRNA: 3'- aCGUCCGCG-GUUCu----CUGaa---------GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 34784 | 0.76 | 0.312594 |
Target: 5'- gGCGcGGCgGCCGAccgcGAGGCgcgCGCGCGCg -3' miRNA: 3'- aCGU-CCG-CGGUU----CUCUGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 67982 | 0.76 | 0.312594 |
Target: 5'- cGCGGacaagcGCGCCGAGGucGAgUUUGCGCGCg -3' miRNA: 3'- aCGUC------CGCGGUUCU--CUgAAGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 75907 | 0.76 | 0.31839 |
Target: 5'- gUGgAGGCGCUggGGGACcgcggggccgcCGCGCGCc -3' miRNA: 3'- -ACgUCCGCGGuuCUCUGaa---------GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 66987 | 0.76 | 0.319851 |
Target: 5'- cGCGGGgcucggcugcgcCGCCGAGGGccGCgugCGCGCGCg -3' miRNA: 3'- aCGUCC------------GCGGUUCUC--UGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 119915 | 0.76 | 0.319851 |
Target: 5'- cGCGGGCGCCAAG-----UCGCaGCGCa -3' miRNA: 3'- aCGUCCGCGGUUCucugaAGCG-CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 83974 | 0.75 | 0.342376 |
Target: 5'- gUGCGcGGCGCCAGGGcgcGCUgcacaugagCGCGCGCc -3' miRNA: 3'- -ACGU-CCGCGGUUCUc--UGAa--------GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 50989 | 0.75 | 0.334742 |
Target: 5'- aGUGGGCGCgAGcGAGGCggUGCGCGUg -3' miRNA: 3'- aCGUCCGCGgUU-CUCUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 61743 | 0.75 | 0.342376 |
Target: 5'- cGCGaGCGCCGAG-GGCUcgggguccgCGCGCGCg -3' miRNA: 3'- aCGUcCGCGGUUCuCUGAa--------GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 71965 | 0.75 | 0.342376 |
Target: 5'- cGCGGGCGCCcGGuGGACg--GCGUGCu -3' miRNA: 3'- aCGUCCGCGGuUC-UCUGaagCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 44827 | 0.75 | 0.350134 |
Target: 5'- cGCGGGCGCaCGAcGGGCgagUGCGUGCu -3' miRNA: 3'- aCGUCCGCG-GUUcUCUGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 104172 | 0.75 | 0.334742 |
Target: 5'- cGCGGGCGCCGcgcgcgggucgucggGcGGGACggcguccaggcgcUCGCGCGCg -3' miRNA: 3'- aCGUCCGCGGU---------------U-CUCUGa------------AGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 90074 | 0.75 | 0.334742 |
Target: 5'- cGCGGGCGCCGAGGGcaGCgaCGgGgGCc -3' miRNA: 3'- aCGUCCGCGGUUCUC--UGaaGCgCgCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 34362 | 0.75 | 0.358017 |
Target: 5'- gGcCGGGCGCCGcGcGGCgcCGCGCGCa -3' miRNA: 3'- aC-GUCCGCGGUuCuCUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 4957 | 0.75 | 0.358017 |
Target: 5'- gGCGGGCGCCGGcgcccuGGuAC-UCGCGCGCc -3' miRNA: 3'- aCGUCCGCGGUUc-----UC-UGaAGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 37162 | 0.75 | 0.358017 |
Target: 5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3' miRNA: 3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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