miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 79272 0.75 0.358017
Target:  5'- cGCGGGCGCCGAGGcGCUgcuggcCGaGCGCu -3'
miRNA:   3'- aCGUCCGCGGUUCUcUGAa-----GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 50989 0.75 0.334742
Target:  5'- aGUGGGCGCgAGcGAGGCggUGCGCGUg -3'
miRNA:   3'- aCGUCCGCGgUU-CUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 44827 0.75 0.350134
Target:  5'- cGCGGGCGCaCGAcGGGCgagUGCGUGCu -3'
miRNA:   3'- aCGUCCGCG-GUUcUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 37162 0.75 0.358017
Target:  5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 54009 0.74 0.366023
Target:  5'- -aCAGGCGCCGccgcGAGcGCUUCGCGCacGCg -3'
miRNA:   3'- acGUCCGCGGUu---CUC-UGAAGCGCG--CG- -5'
23565 5' -57.2 NC_005261.1 + 82951 0.74 0.390772
Target:  5'- aGCGcGGCGCCGGGcggaAGACgUgGUGCGCg -3'
miRNA:   3'- aCGU-CCGCGGUUC----UCUGaAgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 56396 0.74 0.366023
Target:  5'- cGCGGGgGCCcuGGGcgcccugcGCUUCGCgGCGCa -3'
miRNA:   3'- aCGUCCgCGGuuCUC--------UGAAGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 11470 0.74 0.382402
Target:  5'- aGCGGGCGCgGAGGGGCggggCGgGgGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUCUGaa--GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 32273 0.74 0.374152
Target:  5'- cGCuGGGCGCCGAGGccaucGACg--GCGCGCu -3'
miRNA:   3'- aCG-UCCGCGGUUCU-----CUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 42215 0.74 0.382402
Target:  5'- cGCGGGCGCCccgccgcGAG-CUccgcCGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGuu-----CUCuGAa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 110528 0.74 0.374152
Target:  5'- cUGCGGG-GCgCAGGAGGg--CGCGCGCa -3'
miRNA:   3'- -ACGUCCgCG-GUUCUCUgaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 91854 0.74 0.407867
Target:  5'- gGCcGGCGCCGAGAGcgagcACUUCGuCGgGUu -3'
miRNA:   3'- aCGuCCGCGGUUCUC-----UGAAGC-GCgCG- -5'
23565 5' -57.2 NC_005261.1 + 1734 0.74 0.407867
Target:  5'- aGCAGGCGUCGGcgccGAGcugcucgcuGCUgccCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUU----CUC---------UGAa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 36619 0.74 0.397554
Target:  5'- cGCgagAGGCGCU-AGAGGCggcaaaggcggCGCGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuUCUCUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 56717 0.74 0.390772
Target:  5'- cGCcuGGCGCC-GGcGGCggCGCGCGCg -3'
miRNA:   3'- aCGu-CCGCGGuUCuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 87030 0.74 0.390772
Target:  5'- aGCAGcGCGCCcGGGGGCguggcgagcgUCGCcaGCGCg -3'
miRNA:   3'- aCGUC-CGCGGuUCUCUGa---------AGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 115987 0.74 0.382402
Target:  5'- aGCGGGCGCgGAGGGGCggggCGgGgGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUCUGaa--GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 72511 0.74 0.374152
Target:  5'- aGCGGGCGCCGcauccuccuuGGcGGC-UCGCuGCGCg -3'
miRNA:   3'- aCGUCCGCGGU----------UCuCUGaAGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 22182 0.74 0.373333
Target:  5'- cGCgGGGCGCCAAGgccaucguggcgcAGACcaUGCGCGCc -3'
miRNA:   3'- aCG-UCCGCGGUUC-------------UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 47837 0.74 0.366023
Target:  5'- cGcCGGGCGCCAGccccgccggcGGGGCcUCGCcGCGCa -3'
miRNA:   3'- aC-GUCCGCGGUU----------CUCUGaAGCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.