miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 12180 0.7 0.620376
Target:  5'- gGCuGGCGCCGgagcgGGAGcACUcguaCGCGCGg -3'
miRNA:   3'- aCGuCCGCGGU-----UCUC-UGAa---GCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 12308 0.7 0.630646
Target:  5'- gGCacGGGCGCguAGccGGCgggCGCGCGCu -3'
miRNA:   3'- aCG--UCCGCGguUCu-CUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 12589 0.66 0.833082
Target:  5'- --gGGGCGCCuAGcggaggauGGACUUCaGCcGCGCc -3'
miRNA:   3'- acgUCCGCGGuUC--------UCUGAAG-CG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 13040 0.69 0.691999
Target:  5'- aGCcaGGGCGC---GGGGCcgCGCGCGCc -3'
miRNA:   3'- aCG--UCCGCGguuCUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13279 0.75 0.350134
Target:  5'- gUGCGGGCuCCAGGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13298 0.66 0.841332
Target:  5'- cGCAGGUGUgCGacGGGGGCcUCGUaCGCa -3'
miRNA:   3'- aCGUCCGCG-GU--UCUCUGaAGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 13650 0.67 0.764948
Target:  5'- aGCGcGCGCCGugccgccgccgcgggGGGGGCgcgggGCGCGCg -3'
miRNA:   3'- aCGUcCGCGGU---------------UCUCUGaag--CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13675 0.66 0.816036
Target:  5'- aGCGGcGCGCCuGGGAGAUggccgguaCGC-CGCa -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 13769 0.66 0.824647
Target:  5'- cGUGGGCGCCccuGAGGGcacccggccccgGCUgguguggCGgCGCGCg -3'
miRNA:   3'- aCGUCCGCGG---UUCUC------------UGAa------GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 13966 0.68 0.712142
Target:  5'- gGcCGGGCGCgCGGGcGGCgcCGCGCGg -3'
miRNA:   3'- aC-GUCCGCG-GUUCuCUGaaGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 14155 0.67 0.78831
Target:  5'- cGCGGGCGCCGGgcugcagucggccGAGcuguaccuGCUggCGCuaGCGCa -3'
miRNA:   3'- aCGUCCGCGGUU-------------CUC--------UGAa-GCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 14283 0.69 0.66143
Target:  5'- aGCGGGCGCUgcGcuGGCUguaucuagCGgGCGCg -3'
miRNA:   3'- aCGUCCGCGGuuCu-CUGAa-------GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 14961 0.67 0.779995
Target:  5'- aGCGGGCguGCCu-GGGGCgacUGCGCGg -3'
miRNA:   3'- aCGUCCG--CGGuuCUCUGaa-GCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 15029 0.69 0.665523
Target:  5'- gGCGGGUGCCGGGGGcguaGCggggggggucggggUCGCG-GCg -3'
miRNA:   3'- aCGUCCGCGGUUCUC----UGa-------------AGCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 15429 0.69 0.691999
Target:  5'- gGCGGGCGCgcggcucucUAAG-GACgccgUCugGCGCGCg -3'
miRNA:   3'- aCGUCCGCG---------GUUCuCUGa---AG--CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 15554 0.66 0.849391
Target:  5'- aGCAGGCGCagcuGAcGAacgugaugcuCUUCGCGCcCa -3'
miRNA:   3'- aCGUCCGCGguu-CU-CU----------GAAGCGCGcG- -5'
23565 5' -57.2 NC_005261.1 + 15947 0.69 0.681848
Target:  5'- gGCAGGaGCCGGG-GGCgagUgGCGgGCg -3'
miRNA:   3'- aCGUCCgCGGUUCuCUGa--AgCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 16604 0.7 0.630646
Target:  5'- aGCAGGCGCCGAaGGuauacccgcGCUcCGCGCcgaGCu -3'
miRNA:   3'- aCGUCCGCGGUUcUC---------UGAaGCGCG---CG- -5'
23565 5' -57.2 NC_005261.1 + 17553 0.66 0.841332
Target:  5'- cGCGGGCccGCCGuucggcGGuGGCcUUGCGgGCg -3'
miRNA:   3'- aCGUCCG--CGGU------UCuCUGaAGCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 17893 0.71 0.529212
Target:  5'- cGCAGggagacGCGCUcGGGGACgcaGCGCGCc -3'
miRNA:   3'- aCGUC------CGCGGuUCUCUGaagCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.