miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 133831 0.66 0.833082
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 133643 0.68 0.726084
Target:  5'- aGCccuGGCGCCGGGGGGCgccccgccggaccCGCcCGCg -3'
miRNA:   3'- aCGu--CCGCGGUUCUCUGaa-----------GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 133351 0.66 0.807257
Target:  5'- cGCGGcGCuGCCGcgcAG-GGCUUCggcugccuGCGCGCg -3'
miRNA:   3'- aCGUC-CG-CGGU---UCuCUGAAG--------CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 133299 0.66 0.816036
Target:  5'- cGUGGcCGCCAAGGacGACUggcugcUCGCGCaGCu -3'
miRNA:   3'- aCGUCcGCGGUUCU--CUGA------AGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 133285 0.68 0.732011
Target:  5'- cGgGGGCGCCu-GGGccGCggCGCGgGCg -3'
miRNA:   3'- aCgUCCGCGGuuCUC--UGaaGCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 132732 0.66 0.816036
Target:  5'- uUGC-GGCGgccccgcacUCAAG-GGCaUCGCGCGCc -3'
miRNA:   3'- -ACGuCCGC---------GGUUCuCUGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 132670 0.68 0.740843
Target:  5'- gUGUGGGUGCgAGGAcaagaugGGCUUC-CGCGUg -3'
miRNA:   3'- -ACGUCCGCGgUUCU-------CUGAAGcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 132628 0.77 0.278187
Target:  5'- cGCuGGCGCCGAG-GACg-CGgGCGCg -3'
miRNA:   3'- aCGuCCGCGGUUCuCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 131757 0.67 0.789227
Target:  5'- gGgAGGCGCCugggguGGGGCggggugUGCGgGCa -3'
miRNA:   3'- aCgUCCGCGGuu----CUCUGaa----GCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 131462 0.67 0.77439
Target:  5'- cGCGGGCGCCucccgccuccGCga-GCGCGCc -3'
miRNA:   3'- aCGUCCGCGGuucuc-----UGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 130517 0.69 0.66143
Target:  5'- cGCAGGCGCUGGccGAa---GCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUcuCUgaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 130325 0.67 0.798318
Target:  5'- -uCAGGCGCCAucuGGuGGCgcCGCGC-Cg -3'
miRNA:   3'- acGUCCGCGGU---UCuCUGaaGCGCGcG- -5'
23565 5' -57.2 NC_005261.1 + 130238 0.66 0.838877
Target:  5'- cGCucAGGCGCCGcgccAGcggcucguacugcgGGGCguccCGCGCGCc -3'
miRNA:   3'- aCG--UCCGCGGU----UC--------------UCUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 129964 0.66 0.816036
Target:  5'- aGCAgGGCgGCCAGGcaAGugU-CGCGCauGCg -3'
miRNA:   3'- aCGU-CCG-CGGUUC--UCugAaGCGCG--CG- -5'
23565 5' -57.2 NC_005261.1 + 129565 0.78 0.218523
Target:  5'- gGCGGGCGUagaggAGGAGGCggcCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGg----UUCUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 129323 0.66 0.833082
Target:  5'- cGCuGGCGCCGcGucgccGACcUCGC-CGCg -3'
miRNA:   3'- aCGuCCGCGGUuCu----CUGaAGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 128887 0.67 0.779995
Target:  5'- gGCGGGgGCCGggugGGAGGCgggCGUcgaaGUGCc -3'
miRNA:   3'- aCGUCCgCGGU----UCUCUGaa-GCG----CGCG- -5'
23565 5' -57.2 NC_005261.1 + 128790 0.66 0.824647
Target:  5'- uUGUcuGGGCGCCcGGgcccgcggcgGGGC-UCGCGCuGCg -3'
miRNA:   3'- -ACG--UCCGCGGuUC----------UCUGaAGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 128563 0.68 0.74182
Target:  5'- cGCuGGCGCUcuGGGGCccggUUGCGCugGCg -3'
miRNA:   3'- aCGuCCGCGGuuCUCUGa---AGCGCG--CG- -5'
23565 5' -57.2 NC_005261.1 + 128518 0.66 0.833082
Target:  5'- gGCGGaGCGCUgcugcuaggggAGGGGGCggaGCGCGg -3'
miRNA:   3'- aCGUC-CGCGG-----------UUCUCUGaagCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.