miRNA display CGI


Results 41 - 60 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 128333 0.72 0.509549
Target:  5'- cUGCGGGgGCUccGAGAGcgGCacccCGCGCGCg -3'
miRNA:   3'- -ACGUCCgCGG--UUCUC--UGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 128020 0.67 0.779995
Target:  5'- gGCAGGCGCgGgcccugGGAGcACgcggUCGgGCGa -3'
miRNA:   3'- aCGUCCGCGgU------UCUC-UGa---AGCgCGCg -5'
23565 5' -57.2 NC_005261.1 + 127974 0.69 0.691999
Target:  5'- gGCagaAGGCGCCAGGcccgcGGCggcgaGUGCGCg -3'
miRNA:   3'- aCG---UCCGCGGUUCu----CUGaag--CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 127861 0.69 0.691999
Target:  5'- cGC-GGCGCCAGGGcACgagcgggagUCGCGCcgGCg -3'
miRNA:   3'- aCGuCCGCGGUUCUcUGa--------AGCGCG--CG- -5'
23565 5' -57.2 NC_005261.1 + 127766 0.67 0.789227
Target:  5'- gGCGGGCGCgAAGAcgcccGGCUgcUCGaGCGg -3'
miRNA:   3'- aCGUCCGCGgUUCU-----CUGA--AGCgCGCg -5'
23565 5' -57.2 NC_005261.1 + 127700 0.68 0.732011
Target:  5'- gGC-GGCGCC-GGAGGagcUGCGCGUg -3'
miRNA:   3'- aCGuCCGCGGuUCUCUgaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 127689 0.76 0.298456
Target:  5'- gGCAGGCGCgCcGGGGGCgacagcgaGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaag-----CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 127643 0.73 0.416589
Target:  5'- gGCGgcGGCGCCGGGGGGCg-CGCGgGUu -3'
miRNA:   3'- aCGU--CCGCGGUUCUCUGaaGCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 127579 0.67 0.789227
Target:  5'- cGCaccaGGGCGCCcuGGGcguCUUCGgggcCGCGCu -3'
miRNA:   3'- aCG----UCCGCGGuuCUCu--GAAGC----GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126936 0.71 0.559203
Target:  5'- aGCAGcGCgGCCAGG-GGCgcCGgGCGCg -3'
miRNA:   3'- aCGUC-CG-CGGUUCuCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126700 0.66 0.841332
Target:  5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3'
miRNA:   3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126603 0.67 0.789227
Target:  5'- aGgGGGCGCCGcguGGGGGCgggagggCGgUGUGCg -3'
miRNA:   3'- aCgUCCGCGGU---UCUCUGaa-----GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126402 1.11 0.001447
Target:  5'- gUGCAGGCGCCAAGAGACUUCGCGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUCUCUGAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126111 0.75 0.350134
Target:  5'- gGCGGGCGCCAuccuggcgcuAGAG-CUggCGCcGCGCc -3'
miRNA:   3'- aCGUCCGCGGU----------UCUCuGAa-GCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 126087 0.72 0.507599
Target:  5'- gGCGGGCGCgcccau-CUUCGCGCGUa -3'
miRNA:   3'- aCGUCCGCGguucucuGAAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 125743 0.66 0.841332
Target:  5'- cGCaaGGGgGCCGGGgccaGGGCUgcCGCGgGCu -3'
miRNA:   3'- aCG--UCCgCGGUUC----UCUGAa-GCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 125502 0.67 0.779995
Target:  5'- cGCccaGGGgGCCGGcGGGCc-CGCGCGCc -3'
miRNA:   3'- aCG---UCCgCGGUUcUCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 125467 0.69 0.640917
Target:  5'- --aGGGCGCCGAGAaaGCcgCGgGCGCg -3'
miRNA:   3'- acgUCCGCGGUUCUc-UGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 125358 0.68 0.739865
Target:  5'- aGCAGGCuccGCCGggcagAGGGGCgcuggaacgggUGCGUGCg -3'
miRNA:   3'- aCGUCCG---CGGU-----UCUCUGaa---------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 125298 0.73 0.434368
Target:  5'- cGCGGGCGCC---GGACccgCGgGCGCu -3'
miRNA:   3'- aCGUCCGCGGuucUCUGaa-GCgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.