miRNA display CGI


Results 61 - 80 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 85584 0.66 0.839697
Target:  5'- cGCGGG-GCCGggggcGGAGACguguaccguacCGCGCGa -3'
miRNA:   3'- aCGUCCgCGGU-----UCUCUGaa---------GCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 130238 0.66 0.838877
Target:  5'- cGCucAGGCGCCGcgccAGcggcucguacugcgGGGCguccCGCGCGCc -3'
miRNA:   3'- aCG--UCCGCGGU----UC--------------UCUGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 120075 0.66 0.833082
Target:  5'- cGCAacGGCuacCCcguGGAGGCUcggcaCGCGCGCg -3'
miRNA:   3'- aCGU--CCGc--GGu--UCUCUGAa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 56243 0.66 0.833082
Target:  5'- gGCAGcGCGCaCA----ACUUCGCGCaGCc -3'
miRNA:   3'- aCGUC-CGCG-GUucucUGAAGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 79068 0.66 0.833082
Target:  5'- gGCGGGC-UgGGGcGGGCgcCGCGCGCc -3'
miRNA:   3'- aCGUCCGcGgUUC-UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 103278 0.66 0.833082
Target:  5'- -cCAGcGCGCCGGGuGc---CGCGCGCa -3'
miRNA:   3'- acGUC-CGCGGUUCuCugaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 83655 0.66 0.833082
Target:  5'- aGC-GGCGU---GAGGCggaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGguuCUCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 115826 0.66 0.833082
Target:  5'- cGCGGuGCGCCAGcuuGGGCgcgUUGgccCGCGCg -3'
miRNA:   3'- aCGUC-CGCGGUUc--UCUGa--AGC---GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 19735 0.66 0.833082
Target:  5'- aGC-GGCGCCAGGGucCgcaGCGcCGCa -3'
miRNA:   3'- aCGuCCGCGGUUCUcuGaagCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 19656 0.66 0.833082
Target:  5'- gGCGGcgcGCGCCGccgcgcgcgcGGGcacGGCguccUCGCGCGCg -3'
miRNA:   3'- aCGUC---CGCGGU----------UCU---CUGa---AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 65032 0.66 0.833082
Target:  5'- --gAGGCGCCc-GGGGCcaaccucgUCGUGUGCa -3'
miRNA:   3'- acgUCCGCGGuuCUCUGa-------AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 23115 0.66 0.833082
Target:  5'- cGUGGGCGCCGu-GGGCagCGC-CGCc -3'
miRNA:   3'- aCGUCCGCGGUucUCUGaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 88032 0.66 0.833082
Target:  5'- gGC-GGUGCCuGGGGGCgguccagUCaCGCGCc -3'
miRNA:   3'- aCGuCCGCGGuUCUCUGa------AGcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 29314 0.66 0.833082
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 87440 0.66 0.833082
Target:  5'- gGCGgcGGCGCCGGGGcGGCcgcCGC-CGCg -3'
miRNA:   3'- aCGU--CCGCGGUUCU-CUGaa-GCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 128518 0.66 0.833082
Target:  5'- gGCGGaGCGCUgcugcuaggggAGGGGGCggaGCGCGg -3'
miRNA:   3'- aCGUC-CGCGG-----------UUCUCUGaagCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 129323 0.66 0.833082
Target:  5'- cGCuGGCGCCGcGucgccGACcUCGC-CGCg -3'
miRNA:   3'- aCGuCCGCGGUuCu----CUGaAGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 133831 0.66 0.833082
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 135132 0.66 0.833082
Target:  5'- cGCAGcGCGgCGggGGAGACgaCGC-CGCc -3'
miRNA:   3'- aCGUC-CGCgGU--UCUCUGaaGCGcGCG- -5'
23565 5' -57.2 NC_005261.1 + 26038 0.66 0.833082
Target:  5'- aGUAGGUagcagcugGCCAGcGAG-CccCGCGCGCg -3'
miRNA:   3'- aCGUCCG--------CGGUU-CUCuGaaGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.