Results 41 - 60 of 813 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23565 | 5' | -57.2 | NC_005261.1 | + | 123468 | 0.66 | 0.841332 |
Target: 5'- cGCGGGCcucCCAgaacuccaccAGGGACacCGgGCGCa -3' miRNA: 3'- aCGUCCGc--GGU----------UCUCUGaaGCgCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 17553 | 0.66 | 0.841332 |
Target: 5'- cGCGGGCccGCCGuucggcGGuGGCcUUGCGgGCg -3' miRNA: 3'- aCGUCCG--CGGU------UCuCUGaAGCGCgCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 82294 | 0.66 | 0.841332 |
Target: 5'- aUGCA-GCGCCc-GAGGCUguccaUCGaGCGCu -3' miRNA: 3'- -ACGUcCGCGGuuCUCUGA-----AGCgCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 46050 | 0.66 | 0.841332 |
Target: 5'- aGCGgcGGCGUCGGGcccggcGGCUccaccgagCGCGCGCu -3' miRNA: 3'- aCGU--CCGCGGUUCu-----CUGAa-------GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 125743 | 0.66 | 0.841332 |
Target: 5'- cGCaaGGGgGCCGGGgccaGGGCUgcCGCGgGCu -3' miRNA: 3'- aCG--UCCgCGGUUC----UCUGAa-GCGCgCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 67373 | 0.66 | 0.841332 |
Target: 5'- gGCAGcGCcaccGCCGcGaAGACcgcCGCGCGCg -3' miRNA: 3'- aCGUC-CG----CGGUuC-UCUGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 3922 | 0.66 | 0.841332 |
Target: 5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3' miRNA: 3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 91639 | 0.66 | 0.841332 |
Target: 5'- cGCA-GUGCCcGGGGcCgugUCGCGCGa -3' miRNA: 3'- aCGUcCGCGGuUCUCuGa--AGCGCGCg -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 72710 | 0.66 | 0.841332 |
Target: 5'- cGCGGccGCGCUggGuGAUggaGUGCGCc -3' miRNA: 3'- aCGUC--CGCGGuuCuCUGaagCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 106804 | 0.66 | 0.841332 |
Target: 5'- cGCAccaGCGCCGAGuGGCccgccagcaGCGCGUg -3' miRNA: 3'- aCGUc--CGCGGUUCuCUGaag------CGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 108439 | 0.66 | 0.841332 |
Target: 5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3' miRNA: 3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 60344 | 0.66 | 0.841332 |
Target: 5'- uUGC-GGCGCCGc--GGC--CGCGCGCc -3' miRNA: 3'- -ACGuCCGCGGUucuCUGaaGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 126700 | 0.66 | 0.841332 |
Target: 5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3' miRNA: 3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 70777 | 0.66 | 0.841332 |
Target: 5'- cGCGGGCGUgCGGGcGGACcggcugcccUUUGgGCGCu -3' miRNA: 3'- aCGUCCGCG-GUUC-UCUG---------AAGCgCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 119190 | 0.66 | 0.841332 |
Target: 5'- cGCcGGa-CCGAGAGuCUacCGCGCGCc -3' miRNA: 3'- aCGuCCgcGGUUCUCuGAa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 68762 | 0.66 | 0.841332 |
Target: 5'- --gGGGCGCCGcGGAGccgccgugucgaACUUCGUGCa- -3' miRNA: 3'- acgUCCGCGGU-UCUC------------UGAAGCGCGcg -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 113017 | 0.66 | 0.841332 |
Target: 5'- gGCGGGCaguaccCCAcAGAG-CgggcCGCGCGCg -3' miRNA: 3'- aCGUCCGc-----GGU-UCUCuGaa--GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 49356 | 0.66 | 0.840515 |
Target: 5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3' miRNA: 3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 54282 | 0.66 | 0.840515 |
Target: 5'- cGCGGGUgggGCgGGGAcagcgauGGCggcCGCGCGCu -3' miRNA: 3'- aCGUCCG---CGgUUCU-------CUGaa-GCGCGCG- -5' |
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23565 | 5' | -57.2 | NC_005261.1 | + | 9844 | 0.66 | 0.840515 |
Target: 5'- aUGC-GGCGCgAGGAagcgaugGACUUCuggaGCGCGg -3' miRNA: 3'- -ACGuCCGCGgUUCU-------CUGAAG----CGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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