miRNA display CGI


Results 41 - 60 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 123468 0.66 0.841332
Target:  5'- cGCGGGCcucCCAgaacuccaccAGGGACacCGgGCGCa -3'
miRNA:   3'- aCGUCCGc--GGU----------UCUCUGaaGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 17553 0.66 0.841332
Target:  5'- cGCGGGCccGCCGuucggcGGuGGCcUUGCGgGCg -3'
miRNA:   3'- aCGUCCG--CGGU------UCuCUGaAGCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 82294 0.66 0.841332
Target:  5'- aUGCA-GCGCCc-GAGGCUguccaUCGaGCGCu -3'
miRNA:   3'- -ACGUcCGCGGuuCUCUGA-----AGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 46050 0.66 0.841332
Target:  5'- aGCGgcGGCGUCGGGcccggcGGCUccaccgagCGCGCGCu -3'
miRNA:   3'- aCGU--CCGCGGUUCu-----CUGAa-------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 125743 0.66 0.841332
Target:  5'- cGCaaGGGgGCCGGGgccaGGGCUgcCGCGgGCu -3'
miRNA:   3'- aCG--UCCgCGGUUC----UCUGAa-GCGCgCG- -5'
23565 5' -57.2 NC_005261.1 + 67373 0.66 0.841332
Target:  5'- gGCAGcGCcaccGCCGcGaAGACcgcCGCGCGCg -3'
miRNA:   3'- aCGUC-CG----CGGUuC-UCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 3922 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 91639 0.66 0.841332
Target:  5'- cGCA-GUGCCcGGGGcCgugUCGCGCGa -3'
miRNA:   3'- aCGUcCGCGGuUCUCuGa--AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 72710 0.66 0.841332
Target:  5'- cGCGGccGCGCUggGuGAUggaGUGCGCc -3'
miRNA:   3'- aCGUC--CGCGGuuCuCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106804 0.66 0.841332
Target:  5'- cGCAccaGCGCCGAGuGGCccgccagcaGCGCGUg -3'
miRNA:   3'- aCGUc--CGCGGUUCuCUGaag------CGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 108439 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60344 0.66 0.841332
Target:  5'- uUGC-GGCGCCGc--GGC--CGCGCGCc -3'
miRNA:   3'- -ACGuCCGCGGUucuCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 126700 0.66 0.841332
Target:  5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3'
miRNA:   3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 70777 0.66 0.841332
Target:  5'- cGCGGGCGUgCGGGcGGACcggcugcccUUUGgGCGCu -3'
miRNA:   3'- aCGUCCGCG-GUUC-UCUG---------AAGCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 119190 0.66 0.841332
Target:  5'- cGCcGGa-CCGAGAGuCUacCGCGCGCc -3'
miRNA:   3'- aCGuCCgcGGUUCUCuGAa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 68762 0.66 0.841332
Target:  5'- --gGGGCGCCGcGGAGccgccgugucgaACUUCGUGCa- -3'
miRNA:   3'- acgUCCGCGGU-UCUC------------UGAAGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 113017 0.66 0.841332
Target:  5'- gGCGGGCaguaccCCAcAGAG-CgggcCGCGCGCg -3'
miRNA:   3'- aCGUCCGc-----GGU-UCUCuGaa--GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 49356 0.66 0.840515
Target:  5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3'
miRNA:   3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5'
23565 5' -57.2 NC_005261.1 + 54282 0.66 0.840515
Target:  5'- cGCGGGUgggGCgGGGAcagcgauGGCggcCGCGCGCu -3'
miRNA:   3'- aCGUCCG---CGgUUCU-------CUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 9844 0.66 0.840515
Target:  5'- aUGC-GGCGCgAGGAagcgaugGACUUCuggaGCGCGg -3'
miRNA:   3'- -ACGuCCGCGgUUCU-------CUGAAG----CGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.