miRNA display CGI


Results 21 - 40 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 86595 0.66 0.849391
Target:  5'- gGCGGGC-CCGGGcAGcACUU-GCGUGUa -3'
miRNA:   3'- aCGUCCGcGGUUC-UC-UGAAgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 32332 0.66 0.849391
Target:  5'- aGCGGcccGCGCCcGGAGAUgugcUCGauCGUGCa -3'
miRNA:   3'- aCGUC---CGCGGuUCUCUGa---AGC--GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 63976 0.66 0.849391
Target:  5'- cGCGcGCGCgAAuGGGACguacUCGgCGCGCc -3'
miRNA:   3'- aCGUcCGCGgUU-CUCUGa---AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 117541 0.66 0.849391
Target:  5'- cGC-GGCGCCgGAGGGGCUgacCGUGUu -3'
miRNA:   3'- aCGuCCGCGG-UUCUCUGAagcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60413 0.66 0.849391
Target:  5'- cGguGGUGCUggGGcGGCagcucggCGgGCGCg -3'
miRNA:   3'- aCguCCGCGGuuCU-CUGaa-----GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 43360 0.66 0.849391
Target:  5'- cGCGGGcCGCCcgcccGGGC--CGUGCGCg -3'
miRNA:   3'- aCGUCC-GCGGuuc--UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 60739 0.66 0.848594
Target:  5'- gGCGGGCGgCAGGAaguacggGGCgggCGgGgGCg -3'
miRNA:   3'- aCGUCCGCgGUUCU-------CUGaa-GCgCgCG- -5'
23565 5' -57.2 NC_005261.1 + 83147 0.66 0.848594
Target:  5'- cUGCAGGUGCggCAGGuacuGGCUcacgucgcagagcUCGgUGCGCa -3'
miRNA:   3'- -ACGUCCGCG--GUUCu---CUGA-------------AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 80626 0.66 0.848594
Target:  5'- cUGCGcGGCgugcgccGCCAGGuGGCacaUCGaCGCGCu -3'
miRNA:   3'- -ACGU-CCG-------CGGUUCuCUGa--AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 107169 0.66 0.848594
Target:  5'- gGCGGGCagcggcggcucccGCCGcgcuGGGGACccggCGgCGCGCc -3'
miRNA:   3'- aCGUCCG-------------CGGU----UCUCUGaa--GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 2652 0.66 0.848594
Target:  5'- gGCGGGCagcggcggcucccGCCGcgcuGGGGACccggCGgCGCGCc -3'
miRNA:   3'- aCGUCCG-------------CGGU----UCUCUGaa--GC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 115617 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 11099 0.66 0.846994
Target:  5'- gGCGGGaCGCgAcGGGACgagaugcgccggcagCGUGCGCc -3'
miRNA:   3'- aCGUCC-GCGgUuCUCUGaa-------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 34364 0.66 0.84377
Target:  5'- gGC-GGCGCCGccccgccgccgccgcGGC-UCGCGCGCa -3'
miRNA:   3'- aCGuCCGCGGUucu------------CUGaAGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 72710 0.66 0.841332
Target:  5'- cGCGGccGCGCUggGuGAUggaGUGCGCc -3'
miRNA:   3'- aCGUC--CGCGGuuCuCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 46050 0.66 0.841332
Target:  5'- aGCGgcGGCGUCGGGcccggcGGCUccaccgagCGCGCGCu -3'
miRNA:   3'- aCGU--CCGCGGUUCu-----CUGAa-------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 91639 0.66 0.841332
Target:  5'- cGCA-GUGCCcGGGGcCgugUCGCGCGa -3'
miRNA:   3'- aCGUcCGCGGuUCUCuGa--AGCGCGCg -5'
23565 5' -57.2 NC_005261.1 + 41648 0.66 0.841332
Target:  5'- gGCAGaGCGCCGccggggucacGGcGGACauaUUCGCGCuacGCa -3'
miRNA:   3'- aCGUC-CGCGGU----------UC-UCUG---AAGCGCG---CG- -5'
23565 5' -57.2 NC_005261.1 + 108439 0.66 0.841332
Target:  5'- cGCcGGCGCCGgccuccggguaGGccauGGGCgcguaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGU-----------UC----UCUGaa---GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 63437 0.66 0.841332
Target:  5'- cGCGGGCcUCGAuAGGCcggaUGCGCGCg -3'
miRNA:   3'- aCGUCCGcGGUUcUCUGaa--GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.