miRNA display CGI


Results 1 - 20 of 813 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 5' -57.2 NC_005261.1 + 59208 0.66 0.85256
Target:  5'- cGCGGGCGCCccgggcgaggaggggGAGgaGGAgUUUGaCGCGg -3'
miRNA:   3'- aCGUCCGCGG---------------UUC--UCUgAAGC-GCGCg -5'
23565 5' -57.2 NC_005261.1 + 86291 0.66 0.850186
Target:  5'- cGguGGCGCCGGcgacgagcGGGACcaggccgcggccgcUGCGCGCc -3'
miRNA:   3'- aCguCCGCGGUU--------CUCUGaa------------GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 93995 0.66 0.849391
Target:  5'- gGCcGcGCGCUggGcGGCcagcagCGCGCGCu -3'
miRNA:   3'- aCGuC-CGCGGuuCuCUGaa----GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 63976 0.66 0.849391
Target:  5'- cGCGcGCGCgAAuGGGACguacUCGgCGCGCc -3'
miRNA:   3'- aCGUcCGCGgUU-CUCUGa---AGC-GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 44585 0.66 0.849391
Target:  5'- gGUGGGCGUacgcGGACcUCGCGCuGCu -3'
miRNA:   3'- aCGUCCGCGguucUCUGaAGCGCG-CG- -5'
23565 5' -57.2 NC_005261.1 + 86595 0.66 0.849391
Target:  5'- gGCGGGC-CCGGGcAGcACUU-GCGUGUa -3'
miRNA:   3'- aCGUCCGcGGUUC-UC-UGAAgCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 43360 0.66 0.849391
Target:  5'- cGCGGGcCGCCcgcccGGGC--CGUGCGCg -3'
miRNA:   3'- aCGUCC-GCGGuuc--UCUGaaGCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 106418 0.66 0.849391
Target:  5'- aGCGcGCGCCGcucAGGCca-GCGCGCg -3'
miRNA:   3'- aCGUcCGCGGUuc-UCUGaagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 82275 0.66 0.849391
Target:  5'- cGCGggagacccGGCGCCGGGGagccaaacGGCU--GCGCGCc -3'
miRNA:   3'- aCGU--------CCGCGGUUCU--------CUGAagCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 76009 0.66 0.849391
Target:  5'- cGCgaGGGCGC--AGAcGCggcCGCGCGCa -3'
miRNA:   3'- aCG--UCCGCGguUCUcUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 123099 0.66 0.849391
Target:  5'- gGCGGGgGCgAAG-GAg-UCGCGaCGCc -3'
miRNA:   3'- aCGUCCgCGgUUCuCUgaAGCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 49379 0.66 0.849391
Target:  5'- cGCgAGGCGCggccCAGGuagccgacgccGGGCcggCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCG----GUUC-----------UCUGaa-GCGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 32332 0.66 0.849391
Target:  5'- aGCGGcccGCGCCcGGAGAUgugcUCGauCGUGCa -3'
miRNA:   3'- aCGUC---CGCGGuUCUCUGa---AGC--GCGCG- -5'
23565 5' -57.2 NC_005261.1 + 15554 0.66 0.849391
Target:  5'- aGCAGGCGCagcuGAcGAacgugaugcuCUUCGCGCcCa -3'
miRNA:   3'- aCGUCCGCGguu-CU-CU----------GAAGCGCGcG- -5'
23565 5' -57.2 NC_005261.1 + 58996 0.66 0.849391
Target:  5'- gUGCuGGGCGCCGc-GGGCgcCGCGCu- -3'
miRNA:   3'- -ACG-UCCGCGGUucUCUGaaGCGCGcg -5'
23565 5' -57.2 NC_005261.1 + 60413 0.66 0.849391
Target:  5'- cGguGGUGCUggGGcGGCagcucggCGgGCGCg -3'
miRNA:   3'- aCguCCGCGGuuCU-CUGaa-----GCgCGCG- -5'
23565 5' -57.2 NC_005261.1 + 49447 0.66 0.849391
Target:  5'- cUGCGcGGCGCCGGcggccagggccGAGGag-CGCaGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUU-----------CUCUgaaGCG-CGCG- -5'
23565 5' -57.2 NC_005261.1 + 117541 0.66 0.849391
Target:  5'- cGC-GGCGCCgGAGGGGCUgacCGUGUu -3'
miRNA:   3'- aCGuCCGCGG-UUCUCUGAagcGCGCG- -5'
23565 5' -57.2 NC_005261.1 + 41488 0.66 0.849391
Target:  5'- cGC-GGC-CCAGGccgGGAC-UCGCGcCGCg -3'
miRNA:   3'- aCGuCCGcGGUUC---UCUGaAGCGC-GCG- -5'
23565 5' -57.2 NC_005261.1 + 83067 0.66 0.849391
Target:  5'- cGCgAGcCGCCGgcGGcGGCgcUCGCGCGCg -3'
miRNA:   3'- aCG-UCcGCGGU--UCuCUGa-AGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.