miRNA display CGI


Results 81 - 100 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 92208 0.66 0.547159
Target:  5'- cGCCCCCGUccuGCucccggacaucgccuGCCGCgcacacaugGCGcCCGuGCUGc -3'
miRNA:   3'- -CGGGGGCA---UG---------------UGGCGa--------CGC-GGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 97117 0.66 0.547159
Target:  5'- gGCCgcggCCGgagGCGCCGCggccacgcucggagGCGCUGGCg- -3'
miRNA:   3'- -CGGg---GGCa--UGUGGCGa-------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 70621 0.66 0.546195
Target:  5'- cCCCCCGgcccagcaugccaaGCGCCGCgGCGCugagguuCGGCg- -3'
miRNA:   3'- cGGGGGCa-------------UGUGGCGaCGCG-------GCCGau -5'
23566 3' -63 NC_005261.1 + 30199 0.66 0.544267
Target:  5'- uGCaCCCGUACuacgcggacgugcuGCCGCUGCuggggcugcccgacgGCgGGCUGg -3'
miRNA:   3'- -CGgGGGCAUG--------------UGGCGACG---------------CGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 10094 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 58987 0.66 0.543305
Target:  5'- gGCCUCCacggGCGgCGgUGCGCCgGGCUc -3'
miRNA:   3'- -CGGGGGca--UGUgGCgACGCGG-CCGAu -5'
23566 3' -63 NC_005261.1 + 97492 0.66 0.543305
Target:  5'- gGCCCuuGgggGCGCCGggGCcGCCGGa-- -3'
miRNA:   3'- -CGGGggCa--UGUGGCgaCG-CGGCCgau -5'
23566 3' -63 NC_005261.1 + 88024 0.66 0.543305
Target:  5'- cGCUugcaCCGggucgacGCGCUGCUGCaCCGGCUGc -3'
miRNA:   3'- -CGGg---GGCa------UGUGGCGACGcGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 45260 0.66 0.543305
Target:  5'- cGCCaccaCCGUGCccGCCGCcGUGCugccguacCGGCUGg -3'
miRNA:   3'- -CGGg---GGCAUG--UGGCGaCGCG--------GCCGAU- -5'
23566 3' -63 NC_005261.1 + 121404 0.66 0.543305
Target:  5'- uGCCCgaGUGCgACgGCUGCcGCCGccGCUAc -3'
miRNA:   3'- -CGGGggCAUG-UGgCGACG-CGGC--CGAU- -5'
23566 3' -63 NC_005261.1 + 75344 0.66 0.543305
Target:  5'- -gCCCCGccucGCGCgGgCUGCGCCGcGCa- -3'
miRNA:   3'- cgGGGGCa---UGUGgC-GACGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 71172 0.66 0.543305
Target:  5'- aGCCCCCGcgcGCGcCCGCcuacacGgGCgGGCUGg -3'
miRNA:   3'- -CGGGGGCa--UGU-GGCGa-----CgCGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 22306 0.66 0.543305
Target:  5'- uGCCCCgCGcGCGgaCGCgGCgGCCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUGUg-GCGaCG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 117400 0.66 0.543305
Target:  5'- uGCCCCCGcgaacGCGCaguucaGCUGCGCguaaaccaGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGg-----CGACGCGg-------CCGau -5'
23566 3' -63 NC_005261.1 + 65267 0.66 0.543305
Target:  5'- aCCCCCGcggcggcggGCGCgaGCcgGUGCCGGCg- -3'
miRNA:   3'- cGGGGGCa--------UGUGg-CGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 10334 0.66 0.543305
Target:  5'- aGCCcaggCCCGgGC-CCGacggGCGCCGGCg- -3'
miRNA:   3'- -CGG----GGGCaUGuGGCga--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 125262 0.66 0.543305
Target:  5'- gGCCCUCGcugucugggugUGCGCgCGCcGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGC-----------AUGUG-GCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 114612 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 44600 0.66 0.543305
Target:  5'- -aCCUCGcGCuGCUGCUGCugGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUG-UGGCGACG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 126052 0.66 0.543305
Target:  5'- uGCUCCCGcuccgGCGCCaGCcGCccGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa----UGUGG-CGaCG--CGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.