miRNA display CGI


Results 61 - 80 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 134534 0.66 0.556834
Target:  5'- aGCUCCCgGUGCucucggcugcagcggGCCGCgGCcuGCCGGCc- -3'
miRNA:   3'- -CGGGGG-CAUG---------------UGGCGaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 90069 0.66 0.556834
Target:  5'- cGCCCCgCGgGCGCCGagggcaGCgacgggggcccguucGCCGGCUGg -3'
miRNA:   3'- -CGGGG-GCaUGUGGCga----CG---------------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 43200 0.66 0.552958
Target:  5'- cGgCgCCGaGCGCCGCcgGCGgCGGCUu -3'
miRNA:   3'- -CgGgGGCaUGUGGCGa-CGCgGCCGAu -5'
23566 3' -63 NC_005261.1 + 45421 0.66 0.552958
Target:  5'- gGUCCCac-GC-CCGCgcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGgcaUGuGGCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 62743 0.66 0.552958
Target:  5'- cGCCCCgcgcuCGUagcggcccGCGCCGCcGC-CCGGCg- -3'
miRNA:   3'- -CGGGG-----GCA--------UGUGGCGaCGcGGCCGau -5'
23566 3' -63 NC_005261.1 + 43596 0.66 0.552958
Target:  5'- uGUUCgCGcGCGCCGaCgacgGCGCCGGCg- -3'
miRNA:   3'- -CGGGgGCaUGUGGC-Ga---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 78193 0.66 0.552958
Target:  5'- cGCCgCCGUcgGCGCCGacgGCGgCgGGCUc -3'
miRNA:   3'- -CGGgGGCA--UGUGGCga-CGC-GgCCGAu -5'
23566 3' -63 NC_005261.1 + 78841 0.66 0.552958
Target:  5'- cGgCCCgGgcucgGCGCCGUggcgcggGCGCUGGCg- -3'
miRNA:   3'- -CgGGGgCa----UGUGGCGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 61611 0.66 0.552958
Target:  5'- cGCCCaCCG-ACAgcgccuucgccCCGCUGgccgcccgucCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCaUGU-----------GGCGAC----------GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 102450 0.66 0.552958
Target:  5'- cGCCgCCCGgccuCGgCGCgcagGCGCCGGa-- -3'
miRNA:   3'- -CGG-GGGCau--GUgGCGa---CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 90864 0.66 0.552958
Target:  5'- uGCCCUacgACGCCGuCUGCGCgcugggcgaCGGCa- -3'
miRNA:   3'- -CGGGGgcaUGUGGC-GACGCG---------GCCGau -5'
23566 3' -63 NC_005261.1 + 63956 0.66 0.552958
Target:  5'- -gCCCCGUGCGCaGCUggugcgucaGCGCCaGCg- -3'
miRNA:   3'- cgGGGGCAUGUGgCGA---------CGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 34279 0.66 0.552958
Target:  5'- gGCCgCCGcggucGCGCCGCUGCagcguCUGGCa- -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGACGc----GGCCGau -5'
23566 3' -63 NC_005261.1 + 4017 0.66 0.552958
Target:  5'- cGCUgCCGgcCGCCGCgacccgcGCGCCGaGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGa------CGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 65454 0.66 0.552958
Target:  5'- gGCCCCggacgCGUGCGCgGC--CGCCGuGCUGg -3'
miRNA:   3'- -CGGGG-----GCAUGUGgCGacGCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 34356 0.66 0.552958
Target:  5'- cGCCgCCCGgcgGCGCCGCccCGCCgccgccgcGGCUc -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGacGCGG--------CCGAu -5'
23566 3' -63 NC_005261.1 + 52946 0.66 0.55199
Target:  5'- cGCCagucaaaCUCGgagcaGCGCCGCgccggugcgGCGCCGGCa- -3'
miRNA:   3'- -CGG-------GGGCa----UGUGGCGa--------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 80523 0.66 0.55199
Target:  5'- -aCCUCGUGCAgauggacgaggccCUGCUGgcccugugcccCGCCGGCUGg -3'
miRNA:   3'- cgGGGGCAUGU-------------GGCGAC-----------GCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 108645 0.66 0.551023
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
23566 3' -63 NC_005261.1 + 4127 0.66 0.551023
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.