miRNA display CGI


Results 41 - 60 of 537 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 5904 0.66 0.572412
Target:  5'- uGgCCCCGUGCAgguccCCGCgggggaugggGCGCCuaaGGCg- -3'
miRNA:   3'- -CgGGGGCAUGU-----GGCGa---------CGCGG---CCGau -5'
23566 3' -63 NC_005261.1 + 3827 0.66 0.572412
Target:  5'- uGCCgcgggCCCGgGCGCUgGCggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGG-----GGGCaUGUGG-CGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 32417 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 80612 0.66 0.571435
Target:  5'- aGCCaCCCGgaggGCugCGCggcgUGCGCCgccagguGGCa- -3'
miRNA:   3'- -CGG-GGGCa---UGugGCG----ACGCGG-------CCGau -5'
23566 3' -63 NC_005261.1 + 47612 0.66 0.571435
Target:  5'- cGCCCCC-UGCgggggcgGCCGCgGCcGCCGcGCg- -3'
miRNA:   3'- -CGGGGGcAUG-------UGGCGaCG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 60878 0.66 0.569483
Target:  5'- cGgCCUgGUGCACugCGCUcauggcggggggcgGCGCCGGCg- -3'
miRNA:   3'- -CgGGGgCAUGUG--GCGA--------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 101648 0.66 0.569483
Target:  5'- cCCCCCGgugGCCGCgGCGggcccccgcucagcUCGGCUAg -3'
miRNA:   3'- cGGGGGCaugUGGCGaCGC--------------GGCCGAU- -5'
23566 3' -63 NC_005261.1 + 19941 0.66 0.566557
Target:  5'- cGCCCCgGUGC-CCGCggcggcgucacgaagUGCGCgcagugcacCGGCa- -3'
miRNA:   3'- -CGGGGgCAUGuGGCG---------------ACGCG---------GCCGau -5'
23566 3' -63 NC_005261.1 + 104165 0.66 0.562662
Target:  5'- cGCCgUCCGcggGCGCCGC-GCGCgGGUc- -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 135358 0.66 0.562662
Target:  5'- cGCCCCCGaGgGCCGCcGCGUCacCUGg -3'
miRNA:   3'- -CGGGGGCaUgUGGCGaCGCGGccGAU- -5'
23566 3' -63 NC_005261.1 + 83361 0.66 0.562662
Target:  5'- cGCCaucauccggCCGUGCGgguucagcCUGCgGCGCCGGCa- -3'
miRNA:   3'- -CGGg--------GGCAUGU--------GGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 39848 0.66 0.562662
Target:  5'- cGCCCCC--ACGCCGguaUUGCGCCcGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGC---GACGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 80011 0.66 0.562662
Target:  5'- cGCCgCCGcgggcGCGCUGCUgGCGCgCGcGCUGa -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGA-CGCG-GC-CGAU- -5'
23566 3' -63 NC_005261.1 + 62382 0.66 0.562662
Target:  5'- gGCCgCCGUcgGCGCCGC-GCGCCa---- -3'
miRNA:   3'- -CGGgGGCA--UGUGGCGaCGCGGccgau -5'
23566 3' -63 NC_005261.1 + 73586 0.66 0.562662
Target:  5'- cCCCCCGcgGCggaggcggcgGCCGCgaGCGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa-UG----------UGGCGa-CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 44450 0.66 0.562662
Target:  5'- gGCgUCCCGgggGCACCuGCUGCgacGCCGcGCg- -3'
miRNA:   3'- -CG-GGGGCa--UGUGG-CGACG---CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 134053 0.66 0.562662
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
23566 3' -63 NC_005261.1 + 108234 0.66 0.56169
Target:  5'- aGCUCagacGCGCCGCUgccggacGCGCCGGCg- -3'
miRNA:   3'- -CGGGggcaUGUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3717 0.66 0.56169
Target:  5'- aGCUCagacGCGCCGCUgccggacGCGCCGGCg- -3'
miRNA:   3'- -CGGGggcaUGUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 134534 0.66 0.556834
Target:  5'- aGCUCCCgGUGCucucggcugcagcggGCCGCgGCcuGCCGGCc- -3'
miRNA:   3'- -CGGGGG-CAUG---------------UGGCGaCG--CGGCCGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.