miRNA display CGI


Results 41 - 60 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 104348 0.66 0.52417
Target:  5'- cGCCCCgGUgacGCGCCGgaG-GCgGGCg- -3'
miRNA:   3'- -CGGGGgCA---UGUGGCgaCgCGgCCGau -5'
23566 3' -63 NC_005261.1 + 65267 0.66 0.543305
Target:  5'- aCCCCCGcggcggcggGCGCgaGCcgGUGCCGGCg- -3'
miRNA:   3'- cGGGGGCa--------UGUGg-CGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 10334 0.66 0.543305
Target:  5'- aGCCcaggCCCGgGC-CCGacggGCGCCGGCg- -3'
miRNA:   3'- -CGG----GGGCaUGuGGCga--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 80011 0.66 0.562662
Target:  5'- cGCCgCCGcgggcGCGCUGCUgGCGCgCGcGCUGa -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGA-CGCG-GC-CGAU- -5'
23566 3' -63 NC_005261.1 + 63474 0.66 0.533707
Target:  5'- cGCgCCUGUggcGCGCUGCcGCGCCaGCa- -3'
miRNA:   3'- -CGgGGGCA---UGUGGCGaCGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 34279 0.66 0.552958
Target:  5'- gGCCgCCGcggucGCGCCGCUGCagcguCUGGCa- -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGACGc----GGCCGau -5'
23566 3' -63 NC_005261.1 + 108234 0.66 0.56169
Target:  5'- aGCUCagacGCGCCGCUgccggacGCGCCGGCg- -3'
miRNA:   3'- -CGGGggcaUGUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 132948 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 5904 0.66 0.572412
Target:  5'- uGgCCCCGUGCAgguccCCGCgggggaugggGCGCCuaaGGCg- -3'
miRNA:   3'- -CgGGGGCAUGU-----GGCGa---------CGCGG---CCGau -5'
23566 3' -63 NC_005261.1 + 43200 0.66 0.552958
Target:  5'- cGgCgCCGaGCGCCGCcgGCGgCGGCUu -3'
miRNA:   3'- -CgGgGGCaUGUGGCGa-CGCgGCCGAu -5'
23566 3' -63 NC_005261.1 + 86907 0.66 0.572412
Target:  5'- aGCCCgaCGaAgGCgGCggcgGCGCCGGCg- -3'
miRNA:   3'- -CGGGg-GCaUgUGgCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7019 0.66 0.572412
Target:  5'- gGCCa-CGUACGCgGgC-GCGCCGGCg- -3'
miRNA:   3'- -CGGggGCAUGUGgC-GaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 134690 0.66 0.533707
Target:  5'- cGCCCgCCGcGCugCGCgccgaggcgGcCGCCGcGCUGg -3'
miRNA:   3'- -CGGG-GGCaUGugGCGa--------C-GCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 88024 0.66 0.543305
Target:  5'- cGCUugcaCCGggucgacGCGCUGCUGCaCCGGCUGc -3'
miRNA:   3'- -CGGg---GGCa------UGUGGCGACGcGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 99742 0.66 0.533707
Target:  5'- cGCUCCaGUcgACGCCGCcGCGgCCGuGCUGc -3'
miRNA:   3'- -CGGGGgCA--UGUGGCGaCGC-GGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 30199 0.66 0.544267
Target:  5'- uGCaCCCGUACuacgcggacgugcuGCCGCUGCuggggcugcccgacgGCgGGCUGg -3'
miRNA:   3'- -CGgGGGCAUG--------------UGGCGACG---------------CGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 10957 0.66 0.533707
Target:  5'- uGCCCCCGcgGCgggcgggcccGCCGUaGCGCUGGa-- -3'
miRNA:   3'- -CGGGGGCa-UG----------UGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 68442 0.66 0.52417
Target:  5'- cGCCgCCGcGCGCCGCgggaGCGgcucaguccCCGGCg- -3'
miRNA:   3'- -CGGgGGCaUGUGGCGa---CGC---------GGCCGau -5'
23566 3' -63 NC_005261.1 + 53932 0.66 0.52417
Target:  5'- cGCCUUCG-GCGCCGCcggggccgggGcCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGa---------C-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 125262 0.66 0.543305
Target:  5'- gGCCCUCGcugucugggugUGCGCgCGCcGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGC-----------AUGUG-GCGaCGCGgCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.