miRNA display CGI


Results 21 - 40 of 537 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 63474 0.66 0.533707
Target:  5'- cGCgCCUGUggcGCGCUGCcGCGCCaGCa- -3'
miRNA:   3'- -CGgGGGCA---UGUGGCGaCGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 4017 0.66 0.552958
Target:  5'- cGCUgCCGgcCGCCGCgacccgcGCGCCGaGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGa------CGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 43833 0.66 0.52417
Target:  5'- cGCCCuUCGUcgaggaggcCGCCGCcGCGCUGGCc- -3'
miRNA:   3'- -CGGG-GGCAu--------GUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 88024 0.66 0.543305
Target:  5'- cGCUugcaCCGggucgacGCGCUGCUGCaCCGGCUGc -3'
miRNA:   3'- -CGGg---GGCa------UGUGGCGACGcGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 134690 0.66 0.533707
Target:  5'- cGCCCgCCGcGCugCGCgccgaggcgGcCGCCGcGCUGg -3'
miRNA:   3'- -CGGG-GGCaUGugGCGa--------C-GCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 65454 0.66 0.552958
Target:  5'- gGCCCCggacgCGUGCGCgGC--CGCCGuGCUGg -3'
miRNA:   3'- -CGGGG-----GCAUGUGgCGacGCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 33230 0.66 0.533707
Target:  5'- gGCgCCCCGacCGCCGCccgcgcuggGCGCCGGg-- -3'
miRNA:   3'- -CG-GGGGCauGUGGCGa--------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 71172 0.66 0.543305
Target:  5'- aGCCCCCGcgcGCGcCCGCcuacacGgGCgGGCUGg -3'
miRNA:   3'- -CGGGGGCa--UGU-GGCGa-----CgCGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 125262 0.66 0.543305
Target:  5'- gGCCCUCGcugucugggugUGCGCgCGCcGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGC-----------AUGUG-GCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 114612 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 10334 0.66 0.543305
Target:  5'- aGCCcaggCCCGgGC-CCGacggGCGCCGGCg- -3'
miRNA:   3'- -CGG----GGGCaUGuGGCga--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 44600 0.66 0.543305
Target:  5'- -aCCUCGcGCuGCUGCUGCugGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUG-UGGCGACG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 92208 0.66 0.547159
Target:  5'- cGCCCCCGUccuGCucccggacaucgccuGCCGCgcacacaugGCGcCCGuGCUGc -3'
miRNA:   3'- -CGGGGGCA---UG---------------UGGCGa--------CGC-GGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 105817 0.66 0.533707
Target:  5'- gGCUCCCGU-CGCCG--GCGgCGGCa- -3'
miRNA:   3'- -CGGGGGCAuGUGGCgaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 99742 0.66 0.533707
Target:  5'- cGCUCCaGUcgACGCCGCcGCGgCCGuGCUGc -3'
miRNA:   3'- -CGGGGgCA--UGUGGCGaCGC-GGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 30199 0.66 0.544267
Target:  5'- uGCaCCCGUACuacgcggacgugcuGCCGCUGCuggggcugcccgacgGCgGGCUGg -3'
miRNA:   3'- -CGgGGGCAUG--------------UGGCGACG---------------CGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 72883 0.66 0.530839
Target:  5'- uGCCCCgCGUcaucaACggcaacaucccgguGCCGCUGUGcCCGGUg- -3'
miRNA:   3'- -CGGGG-GCA-----UG--------------UGGCGACGC-GGCCGau -5'
23566 3' -63 NC_005261.1 + 21856 0.66 0.52417
Target:  5'- cCCCCCGaucgGCAUUGCgcGCGgCGGCa- -3'
miRNA:   3'- cGGGGGCa---UGUGGCGa-CGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 103778 0.66 0.52417
Target:  5'- gGCCCCCG-GC-CCGUgcccgGCGCguuCGGCa- -3'
miRNA:   3'- -CGGGGGCaUGuGGCGa----CGCG---GCCGau -5'
23566 3' -63 NC_005261.1 + 75344 0.66 0.543305
Target:  5'- -gCCCCGccucGCGCgGgCUGCGCCGcGCa- -3'
miRNA:   3'- cgGGGGCa---UGUGgC-GACGCGGC-CGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.