miRNA display CGI


Results 21 - 40 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 53536 0.75 0.155657
Target:  5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 31164 0.75 0.159543
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7979 0.75 0.159543
Target:  5'- cGCCCCCaGUACgaGCCGCUG-GCgCGGCg- -3'
miRNA:   3'- -CGGGGG-CAUG--UGGCGACgCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 135682 0.75 0.159543
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 8508 0.75 0.159543
Target:  5'- cGCCCCU----GCCGCUGCaGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaugUGGCGACG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 31558 0.75 0.163515
Target:  5'- gGCCCUCGgGCGCgCGCUggacgaccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGA--------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 48151 0.75 0.163515
Target:  5'- gGCCCCCGUcgcugcccucgGCGcCCGCgggGCGCCgcuGGCUGu -3'
miRNA:   3'- -CGGGGGCA-----------UGU-GGCGa--CGCGG---CCGAU- -5'
23566 3' -63 NC_005261.1 + 32307 0.75 0.163515
Target:  5'- cGCCCCCGccgcCGCCGCggccgcgGCGCcCGGCg- -3'
miRNA:   3'- -CGGGGGCau--GUGGCGa------CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 93790 0.75 0.163515
Target:  5'- uGCCCCCGggACGCCGC-GCcGCCGcGCg- -3'
miRNA:   3'- -CGGGGGCa-UGUGGCGaCG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 136824 0.75 0.163515
Target:  5'- cGCCCCCGccgcCGCCGCggccgcgGCGCcCGGCg- -3'
miRNA:   3'- -CGGGGGCau--GUGGCGa------CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 102536 0.75 0.167577
Target:  5'- aGCCCCCGgccCACCGggGCucGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau-GUGGCgaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 63003 0.75 0.167577
Target:  5'- gGCCCUCGgcggccGCGcCCGCgcggGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa-----UGU-GGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 31333 0.75 0.167577
Target:  5'- cGCCgCCaGcGCGCCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGgGG-CaUGUGGCGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 135850 0.75 0.167577
Target:  5'- cGCCgCCaGcGCGCCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGgGG-CaUGUGGCGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 50429 0.75 0.171728
Target:  5'- aGCCgCUCGUGCAgCgugcgcgugaaGCUGCGCCGGCa- -3'
miRNA:   3'- -CGG-GGGCAUGUgG-----------CGACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 17058 0.75 0.171728
Target:  5'- cGgCCCCGUGCACCGa-GCGCCcgGGCa- -3'
miRNA:   3'- -CgGGGGCAUGUGGCgaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 131410 0.75 0.171728
Target:  5'- aGCCCCC---CGCCGCUgccggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGA----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 78776 0.74 0.175972
Target:  5'- cCCCCCG-ACGCCGCggccgcgcUGCuGCCGGCg- -3'
miRNA:   3'- cGGGGGCaUGUGGCG--------ACG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 60291 0.74 0.175972
Target:  5'- cGCCCCCGcgGC-CCGCagGCaGUCGGCUGa -3'
miRNA:   3'- -CGGGGGCa-UGuGGCGa-CG-CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 57340 0.74 0.180308
Target:  5'- aCCCCUGggagGCGCCGCUGaagccCGCgCGGCUGa -3'
miRNA:   3'- cGGGGGCa---UGUGGCGAC-----GCG-GCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.