miRNA display CGI


Results 41 - 60 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 107109 0.74 0.180308
Target:  5'- cGCCCCCa---GCCGCgccaccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaugUGGCGa-----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 57340 0.74 0.180308
Target:  5'- aCCCCUGggagGCGCCGCUGaagccCGCgCGGCUGa -3'
miRNA:   3'- cGGGGGCa---UGUGGCGAC-----GCG-GCCGAU- -5'
23566 3' -63 NC_005261.1 + 58326 0.74 0.180308
Target:  5'- aGCCgCCCGaGCACCGCcucgcggagccGCGCCGGCc- -3'
miRNA:   3'- -CGG-GGGCaUGUGGCGa----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 51743 0.74 0.188808
Target:  5'- gGCCCCCGgGCuGCCGCUggccgugaagcugGCGCUGGCc- -3'
miRNA:   3'- -CGGGGGCaUG-UGGCGA-------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 48628 0.74 0.189265
Target:  5'- aGCCCCaCGcccCGCCcCUGCGCCGGCc- -3'
miRNA:   3'- -CGGGG-GCau-GUGGcGACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 75055 0.74 0.189265
Target:  5'- gGCCauggUGUACACCGCgcGCGCCGGCg- -3'
miRNA:   3'- -CGGgg--GCAUGUGGCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 85253 0.74 0.189265
Target:  5'- cGCCCCCGccugccgGCGCCGCaccgGCGCgGcGCUGc -3'
miRNA:   3'- -CGGGGGCa------UGUGGCGa---CGCGgC-CGAU- -5'
23566 3' -63 NC_005261.1 + 119983 0.74 0.189265
Target:  5'- aGCCCCgGccgACGCUGgaggGCGCCGGCUAc -3'
miRNA:   3'- -CGGGGgCa--UGUGGCga--CGCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 126156 0.74 0.193889
Target:  5'- cGCCCCgGcgcggACGCCGCUGCcgcaccGCCGGUa- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGACG------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 135669 0.74 0.193889
Target:  5'- gGCCCUCGcucgaggagcucUGCGCCGC-GCGgCGGCUAa -3'
miRNA:   3'- -CGGGGGC------------AUGUGGCGaCGCgGCCGAU- -5'
23566 3' -63 NC_005261.1 + 21639 0.74 0.193889
Target:  5'- cGCCCCgGcgcggACGCCGCUGCcgcaccGCCGGUa- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGACG------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 51205 0.74 0.198611
Target:  5'- cGCCCCCGggcGCGCUGCUGCugGgCGcGCUAg -3'
miRNA:   3'- -CGGGGGCa--UGUGGCGACG--CgGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 85205 0.74 0.198611
Target:  5'- -gCCCCG-GCGCCGCggaaGCGCUGGCg- -3'
miRNA:   3'- cgGGGGCaUGUGGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 44768 0.73 0.203433
Target:  5'- cGCgCCCCG-GCACCGCgcugGgGCCGGUg- -3'
miRNA:   3'- -CG-GGGGCaUGUGGCGa---CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 36776 0.73 0.203433
Target:  5'- cGCCggCCCGUGCGuuGCgccgagacuuUGCGCCGGCc- -3'
miRNA:   3'- -CGG--GGGCAUGUggCG----------ACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 54140 0.73 0.20786
Target:  5'- cGCCCCCGUgGCGCauauaugCGC-GUGCCGGCa- -3'
miRNA:   3'- -CGGGGGCA-UGUG-------GCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 70003 0.73 0.20786
Target:  5'- cGCCCCCGccgucaggguCGCCGUUgucggccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau--------GUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 38735 0.73 0.208357
Target:  5'- gGCCCUCGgaggACGCgGCgGCGCUGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGUGgCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 68540 0.73 0.213383
Target:  5'- gGCgCCCGcGCGCCcccuGCUGCGCgGGCUc -3'
miRNA:   3'- -CGgGGGCaUGUGG----CGACGCGgCCGAu -5'
23566 3' -63 NC_005261.1 + 4301 0.73 0.213383
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.