miRNA display CGI


Results 41 - 60 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 10431 0.69 0.367252
Target:  5'- --gCCCGc-CGCCGCgGCGCCGGCc- -3'
miRNA:   3'- cggGGGCauGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 10482 0.67 0.47756
Target:  5'- gGCCggCCCGcUGCACCGgcuuUUGCGCgCGGCc- -3'
miRNA:   3'- -CGG--GGGC-AUGUGGC----GACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 10525 0.67 0.468481
Target:  5'- gGCCCCgCGgcGCGCuCGCUGuCGCCcccGGCg- -3'
miRNA:   3'- -CGGGG-GCa-UGUG-GCGAC-GCGG---CCGau -5'
23566 3' -63 NC_005261.1 + 10592 0.71 0.275767
Target:  5'- cGCCCCCcgGCGCCGCcGCcgucgcguccgGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGCGaCG-----------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 10911 0.68 0.447944
Target:  5'- gGCCCCCGcgggcggcagggcccCACCGCca-GCCGGCg- -3'
miRNA:   3'- -CGGGGGCau-------------GUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 10957 0.66 0.533707
Target:  5'- uGCCCCCGcgGCgggcgggcccGCCGUaGCGCUGGa-- -3'
miRNA:   3'- -CGGGGGCa-UG----------UGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 11040 0.67 0.468481
Target:  5'- uCCCCCGgcggcacucggGCGCCGCccagGCGCCGccaGCg- -3'
miRNA:   3'- cGGGGGCa----------UGUGGCGa---CGCGGC---CGau -5'
23566 3' -63 NC_005261.1 + 11163 0.7 0.351903
Target:  5'- cUCCCCGUAucuCGCCGCgGCcCCGGCc- -3'
miRNA:   3'- cGGGGGCAU---GUGGCGaCGcGGCCGau -5'
23566 3' -63 NC_005261.1 + 11284 0.7 0.322589
Target:  5'- cGCCCCCGcgcccgGCGCCcCUG-GCCGcGCUGc -3'
miRNA:   3'- -CGGGGGCa-----UGUGGcGACgCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 12261 0.69 0.391124
Target:  5'- gGCCCCCGU-CGCCGagcgaagUGCuGCCGuGCg- -3'
miRNA:   3'- -CGGGGGCAuGUGGCg------ACG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 13462 0.66 0.534664
Target:  5'- gGCCCCCGcuccucagccuggagGCgGCCGCUGCGgCuGCg- -3'
miRNA:   3'- -CGGGGGCa--------------UG-UGGCGACGCgGcCGau -5'
23566 3' -63 NC_005261.1 + 13775 0.7 0.351903
Target:  5'- cGCCCCUGaggGCACC-CgGCcCCGGCUGg -3'
miRNA:   3'- -CGGGGGCa--UGUGGcGaCGcGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 14136 0.73 0.229089
Target:  5'- cGgCCCUGUGCGCgCGCUacgcggGCGCCgGGCUGc -3'
miRNA:   3'- -CgGGGGCAUGUG-GCGA------CGCGG-CCGAU- -5'
23566 3' -63 NC_005261.1 + 14274 0.68 0.459491
Target:  5'- cGCUCgCGga-GCgggCGCUGCGCUGGCUGu -3'
miRNA:   3'- -CGGGgGCaugUG---GCGACGCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 14931 0.72 0.269539
Target:  5'- gGCCgCUCGUggACAUCGCggagGCGCUGGCg- -3'
miRNA:   3'- -CGG-GGGCA--UGUGGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 14967 0.66 0.533707
Target:  5'- cGUgCCUGgggcgACugCGCggccGCGCCGGCc- -3'
miRNA:   3'- -CGgGGGCa----UGugGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 15269 0.71 0.288565
Target:  5'- cGCCCCgGcgGCGCCGCcgggGCGCgCGGUc- -3'
miRNA:   3'- -CGGGGgCa-UGUGGCGa---CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 15689 0.7 0.337014
Target:  5'- -gCCCCGcaGCGCgagCGUUGCGUCGGCUGg -3'
miRNA:   3'- cgGGGGCa-UGUG---GCGACGCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 15856 0.66 0.582201
Target:  5'- cGCCCCC--AgGCCGCggugGgGCCGcGCg- -3'
miRNA:   3'- -CGGGGGcaUgUGGCGa---CgCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 16397 0.72 0.24576
Target:  5'- gGCgCCgGUGCGCCGCcGCGgCGGCc- -3'
miRNA:   3'- -CGgGGgCAUGUGGCGaCGCgGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.