miRNA display CGI


Results 21 - 40 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 4017 0.66 0.552958
Target:  5'- cGCUgCCGgcCGCCGCgacccgcGCGCCGaGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGa------CGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 4127 0.66 0.551023
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
23566 3' -63 NC_005261.1 + 4301 0.73 0.213383
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 4520 0.72 0.263426
Target:  5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3'
miRNA:   3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 4681 0.69 0.391124
Target:  5'- cCCCCCGaGCAgcaUGCUGCGCUGcGCg- -3'
miRNA:   3'- cGGGGGCaUGUg--GCGACGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 4852 0.71 0.275767
Target:  5'- cGCgCCCGUGgGCCGC-GCGCaGGCa- -3'
miRNA:   3'- -CGgGGGCAUgUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 4882 0.7 0.35952
Target:  5'- aGCCCUgcgCGgcaGCGCCGCgcgcgcGUGCCGGCa- -3'
miRNA:   3'- -CGGGG---GCa--UGUGGCGa-----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 5324 0.71 0.275767
Target:  5'- aGCCgCCGcucgGCGCCGCccgcgGCGCCcGGCUu -3'
miRNA:   3'- -CGGgGGCa---UGUGGCGa----CGCGG-CCGAu -5'
23566 3' -63 NC_005261.1 + 5474 0.69 0.367252
Target:  5'- aGCCCCCGc-UAUCGCgcGCGCCGGg-- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa-CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 5904 0.66 0.572412
Target:  5'- uGgCCCCGUGCAgguccCCGCgggggaugggGCGCCuaaGGCg- -3'
miRNA:   3'- -CgGGGGCAUGU-----GGCGa---------CGCGG---CCGau -5'
23566 3' -63 NC_005261.1 + 6059 0.7 0.322589
Target:  5'- gGCCCCCGcccGCGCUGCcugcaGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCa--UGUGGCGa----CGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 6397 0.67 0.505298
Target:  5'- cGCCCCCuugAC-CCGCgcGCGuuGGCc- -3'
miRNA:   3'- -CGGGGGca-UGuGGCGa-CGCggCCGau -5'
23566 3' -63 NC_005261.1 + 6461 0.68 0.433089
Target:  5'- gGCCCagCGgcGCGcCCGCcGCGCCGGCc- -3'
miRNA:   3'- -CGGGg-GCa-UGU-GGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 6785 0.7 0.322589
Target:  5'- cGCCCgCGagGCGCgGCgcaagggggGCGCCGGCg- -3'
miRNA:   3'- -CGGGgGCa-UGUGgCGa--------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7019 0.66 0.572412
Target:  5'- gGCCa-CGUACGCgGgC-GCGCCGGCg- -3'
miRNA:   3'- -CGGggGCAUGUGgC-GaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7979 0.75 0.159543
Target:  5'- cGCCCCCaGUACgaGCCGCUG-GCgCGGCg- -3'
miRNA:   3'- -CGGGGG-CAUG--UGGCGACgCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 8331 0.68 0.459491
Target:  5'- uCCCCCG-AC-CCGC-GCGCCGuGCc- -3'
miRNA:   3'- cGGGGGCaUGuGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 8508 0.75 0.159543
Target:  5'- cGCCCCU----GCCGCUGCaGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaugUGGCGACG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 10094 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 10334 0.66 0.543305
Target:  5'- aGCCcaggCCCGgGC-CCGacggGCGCCGGCg- -3'
miRNA:   3'- -CGG----GGGCaUGuGGCga--CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.