miRNA display CGI


Results 21 - 40 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 134534 0.66 0.556834
Target:  5'- aGCUCCCgGUGCucucggcugcagcggGCCGCgGCcuGCCGGCc- -3'
miRNA:   3'- -CGGGGG-CAUG---------------UGGCGaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 134363 0.73 0.218513
Target:  5'- uGCgCgCCGUGCucgccgGCCGCgcgGCGCCGGCg- -3'
miRNA:   3'- -CGgG-GGCAUG------UGGCGa--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 134351 0.72 0.269539
Target:  5'- aGCCCCCGcgcCGCCGCgcggggggcgGCGCC-GCUGg -3'
miRNA:   3'- -CGGGGGCau-GUGGCGa---------CGCGGcCGAU- -5'
23566 3' -63 NC_005261.1 + 134307 0.66 0.582201
Target:  5'- gGCCuaCCCGgaggccgGCGCCgGCgGCGCgGGCg- -3'
miRNA:   3'- -CGG--GGGCa------UGUGG-CGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 134139 0.67 0.47756
Target:  5'- cCCCCUGgGCugCGCcugGCGCCacccggGGCUGc -3'
miRNA:   3'- cGGGGGCaUGugGCGa--CGCGG------CCGAU- -5'
23566 3' -63 NC_005261.1 + 134053 0.66 0.562662
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
23566 3' -63 NC_005261.1 + 133896 0.7 0.351903
Target:  5'- aGCCCgCGgcGCGCUGCUG-GCCuGGCUGc -3'
miRNA:   3'- -CGGGgGCa-UGUGGCGACgCGG-CCGAU- -5'
23566 3' -63 NC_005261.1 + 133844 0.66 0.572412
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
23566 3' -63 NC_005261.1 + 133782 0.7 0.351903
Target:  5'- cGCCCUCGUGCGgCGCauccCGCCcgGGCUGc -3'
miRNA:   3'- -CGGGGGCAUGUgGCGac--GCGG--CCGAU- -5'
23566 3' -63 NC_005261.1 + 133743 0.73 0.229089
Target:  5'- gGCCCgCGcaggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 133636 0.68 0.433089
Target:  5'- cGCgCUCGccGCGCCGCUGCGCgaGcGCUGc -3'
miRNA:   3'- -CGgGGGCa-UGUGGCGACGCGg-C-CGAU- -5'
23566 3' -63 NC_005261.1 + 133264 0.67 0.505298
Target:  5'- gGCCCCagaGgACGCCGCggccggggGCGCCugGGCc- -3'
miRNA:   3'- -CGGGGg--CaUGUGGCGa-------CGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 133084 0.7 0.35952
Target:  5'- gGCCCgCCGggccgAgGCgCGCgaGCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa----UgUG-GCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 133037 0.66 0.533707
Target:  5'- cGCCaCCgcgcacgcaCGUGCugCGCgGCGuuGGCg- -3'
miRNA:   3'- -CGG-GG---------GCAUGugGCGaCGCggCCGau -5'
23566 3' -63 NC_005261.1 + 132948 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 132881 0.69 0.391124
Target:  5'- uGCCCuucuucggcaagCCGgGCGCCGCgggcgGCGCCGaGCg- -3'
miRNA:   3'- -CGGG------------GGCaUGUGGCGa----CGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 132874 0.69 0.375097
Target:  5'- cGUCUCCGUAucCACCGaccaGCCGGCUGg -3'
miRNA:   3'- -CGGGGGCAU--GUGGCgacgCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 132692 0.7 0.337014
Target:  5'- cCCCCCGUcucGCugCGCgccgaaGCCGGCg- -3'
miRNA:   3'- cGGGGGCA---UGugGCGacg---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 132601 0.66 0.533707
Target:  5'- cGCCCggcCCGgcgaGCCGCcaggggGCGCUGGCg- -3'
miRNA:   3'- -CGGG---GGCaug-UGGCGa-----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 132455 0.71 0.275767
Target:  5'- uGCCCCuCGgcCGCC-CUccGCGCCGGCa- -3'
miRNA:   3'- -CGGGG-GCauGUGGcGA--CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.