miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 138101 0.75 0.151858
Target:  5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 137918 0.68 0.459491
Target:  5'- gGCCCCgCGaGCggGCCcgGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUG--UGG--CGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 137814 0.67 0.514699
Target:  5'- cGCCCCUgGUGC-UCGCgGgGCUGGCa- -3'
miRNA:   3'- -CGGGGG-CAUGuGGCGaCgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 137783 0.82 0.050496
Target:  5'- cGCCCCCGggcccCGCCGCccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau---GUGGCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 137242 0.72 0.24576
Target:  5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3'
miRNA:   3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 137056 0.66 0.533707
Target:  5'- cGgCCCCGgcCGCgGCgcGgGCCGGCg- -3'
miRNA:   3'- -CgGGGGCauGUGgCGa-CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 136934 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 136824 0.75 0.163515
Target:  5'- cGCCCCCGccgcCGCCGCggccgcgGCGCcCGGCg- -3'
miRNA:   3'- -CGGGGGCau--GUGGCGa------CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 136667 0.69 0.407592
Target:  5'- gGgCUCgGcGCGCCGCUGCGgCCGGUg- -3'
miRNA:   3'- -CgGGGgCaUGUGGCGACGC-GGCCGau -5'
23566 3' -63 NC_005261.1 + 136516 0.67 0.495972
Target:  5'- gGUgCCCGUGcCGCCGC-GCGaguaCCGGCa- -3'
miRNA:   3'- -CGgGGGCAU-GUGGCGaCGC----GGCCGau -5'
23566 3' -63 NC_005261.1 + 136308 0.71 0.301826
Target:  5'- uGCCCgCGgcgcagUGCGCCGC-GCGCUGGCc- -3'
miRNA:   3'- -CGGGgGC------AUGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 135850 0.75 0.167577
Target:  5'- cGCCgCCaGcGCGCCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGgGG-CaUGUGGCGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 135682 0.75 0.159543
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 135669 0.74 0.193889
Target:  5'- gGCCCUCGcucgaggagcucUGCGCCGC-GCGgCGGCUAa -3'
miRNA:   3'- -CGGGGGC------------AUGUGGCGaCGCgGCCGAU- -5'
23566 3' -63 NC_005261.1 + 135561 0.66 0.527977
Target:  5'- uGCCCCUGcGCACCaaggaccccaucgugGCcacggccgGCGCCGuGCUGg -3'
miRNA:   3'- -CGGGGGCaUGUGG---------------CGa-------CGCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 135358 0.66 0.562662
Target:  5'- cGCCCCCGaGgGCCGCcGCGUCacCUGg -3'
miRNA:   3'- -CGGGGGCaUgUGGCGaCGCGGccGAU- -5'
23566 3' -63 NC_005261.1 + 134876 0.67 0.483967
Target:  5'- gGCCCugaaggccggcgcgCCGgGCGCCGCgGCGCgGGUg- -3'
miRNA:   3'- -CGGG--------------GGCaUGUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 134874 0.67 0.514699
Target:  5'- cGCCCCCGcggGCcCCuGCUGUGCguuCGGUg- -3'
miRNA:   3'- -CGGGGGCa--UGuGG-CGACGCG---GCCGau -5'
23566 3' -63 NC_005261.1 + 134690 0.66 0.533707
Target:  5'- cGCCCgCCGcGCugCGCgccgaggcgGcCGCCGcGCUGg -3'
miRNA:   3'- -CGGG-GGCaUGugGCGa--------C-GCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 134555 0.67 0.514699
Target:  5'- cGCCCCUugcuGggcgGCGCCGCggcUGCGCagGGCg- -3'
miRNA:   3'- -CGGGGG----Ca---UGUGGCG---ACGCGg-CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.