miRNA display CGI


Results 21 - 40 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 45284 0.66 0.582201
Target:  5'- aGCCUuuGUccgggACGCCgggcaGCUGCuccGCCGGCa- -3'
miRNA:   3'- -CGGGggCA-----UGUGG-----CGACG---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 104982 0.66 0.582201
Target:  5'- uCCCCCGccccgGCGCC-CaGCGCgGGCg- -3'
miRNA:   3'- cGGGGGCa----UGUGGcGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 84665 0.66 0.582201
Target:  5'- cGCCgCCCGcGC-CCGCgGCcgcgcacacgaaGCCGGCg- -3'
miRNA:   3'- -CGG-GGGCaUGuGGCGaCG------------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 3827 0.66 0.572412
Target:  5'- uGCCgcgggCCCGgGCGCUgGCggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGG-----GGGCaUGUGG-CGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 26558 0.66 0.572412
Target:  5'- cGCCgaCGUACGCCGCcaccgcgGCGCgggagGGCUGg -3'
miRNA:   3'- -CGGggGCAUGUGGCGa------CGCGg----CCGAU- -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 86907 0.66 0.572412
Target:  5'- aGCCCgaCGaAgGCgGCggcgGCGCCGGCg- -3'
miRNA:   3'- -CGGGg-GCaUgUGgCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7019 0.66 0.572412
Target:  5'- gGCCa-CGUACGCgGgC-GCGCCGGCg- -3'
miRNA:   3'- -CGGggGCAUGUGgC-GaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 132948 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 106971 0.66 0.572412
Target:  5'- cGCCUCgGcgcgcGCGCCGCgcaccGCGUCGGCc- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCGa----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 133844 0.66 0.572412
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
23566 3' -63 NC_005261.1 + 36702 0.66 0.572412
Target:  5'- gGCCCCCc-GCGCUGac-CGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGCgacGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 108344 0.66 0.572412
Target:  5'- uGCCgcgggCCCGgGCGCUgGCggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGG-----GGGCaUGUGG-CGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 29327 0.66 0.572412
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
23566 3' -63 NC_005261.1 + 136934 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 32417 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 91699 0.66 0.572412
Target:  5'- cGCCUgCG-ACAgCCgGCUGCaagGCCGGCUc -3'
miRNA:   3'- -CGGGgGCaUGU-GG-CGACG---CGGCCGAu -5'
23566 3' -63 NC_005261.1 + 117656 0.66 0.572412
Target:  5'- cCCCCCGcuaaGCGCCccGCcGCGCCcGGCc- -3'
miRNA:   3'- cGGGGGCa---UGUGG--CGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 102766 0.66 0.572412
Target:  5'- -aCCCCGggACGCgCGC-GCGCCGcGCc- -3'
miRNA:   3'- cgGGGGCa-UGUG-GCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 5904 0.66 0.572412
Target:  5'- uGgCCCCGUGCAgguccCCGCgggggaugggGCGCCuaaGGCg- -3'
miRNA:   3'- -CgGGGGCAUGU-----GGCGa---------CGCGG---CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.