miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 125121 0.66 0.789208
Target:  5'- cGCGGCcgCCGacgcccccgagccgaGCCCGCCGCccGCCg -3'
miRNA:   3'- aUGUCGa-GGUac-------------UGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 124413 0.74 0.343651
Target:  5'- cUGCAGCgCCAUGGCCUGCuucauCGCgcGCCg -3'
miRNA:   3'- -AUGUCGaGGUACUGGGCG-----GCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 124195 0.66 0.782741
Target:  5'- gACcGCUCgCAUGGCCC--CGCUgGCCa -3'
miRNA:   3'- aUGuCGAG-GUACUGGGcgGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 123446 0.79 0.183977
Target:  5'- cGCAGCUCgcgCAUGACgCCGUCGCggGCCu -3'
miRNA:   3'- aUGUCGAG---GUACUG-GGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 123388 1.1 0.001209
Target:  5'- gUACAGCUCCAUGACCCGCCGCUUGCCg -3'
miRNA:   3'- -AUGUCGAGGUACUGGGCGGCGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 123038 0.66 0.809947
Target:  5'- gGCAGCaggcaccccuUCUcUG-CCCGCCGCUcgaugagGCCc -3'
miRNA:   3'- aUGUCG----------AGGuACuGGGCGGCGAa------CGG- -5'
23567 3' -57.7 NC_005261.1 + 122977 0.66 0.773387
Target:  5'- cACAgGCUCgGUGGCCUcCUGCaggGCCa -3'
miRNA:   3'- aUGU-CGAGgUACUGGGcGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 122929 0.67 0.763904
Target:  5'- -cCGGCUCCGacGACCCGgaggccgcgaCCGCgcGCCc -3'
miRNA:   3'- auGUCGAGGUa-CUGGGC----------GGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 122690 0.73 0.400847
Target:  5'- cUGCGccuGCUCCAUcGCCgCGCCGCcgGCCg -3'
miRNA:   3'- -AUGU---CGAGGUAcUGG-GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 122580 0.71 0.52153
Target:  5'- cGCAGCUCCGccgcagcGGCCuuguaCGCCGCguugucgUGCCu -3'
miRNA:   3'- aUGUCGAGGUa------CUGG-----GCGGCGa------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 122364 0.71 0.528461
Target:  5'- cGCGGCUCgCGcGGCCCcaccgcggccugggGgCGCUUGCCa -3'
miRNA:   3'- aUGUCGAG-GUaCUGGG--------------CgGCGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 122113 0.69 0.643548
Target:  5'- cGCGGCcgCgGUGAUcgcgugcguggCCGCCGCcggUGCCg -3'
miRNA:   3'- aUGUCGa-GgUACUG-----------GGCGGCGa--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 121840 0.66 0.80103
Target:  5'- gGCGGCgcaccggcgCCAgcaGCCCGCgGCUcccGCCg -3'
miRNA:   3'- aUGUCGa--------GGUac-UGGGCGgCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 121565 0.66 0.809947
Target:  5'- cACGGaCUUCAUGcuCUCGCUGCcaGCCg -3'
miRNA:   3'- aUGUC-GAGGUACu-GGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 121496 0.66 0.80103
Target:  5'- gGCGGCgcCCGcgcGGCUCGCCGaggGCCa -3'
miRNA:   3'- aUGUCGa-GGUa--CUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 121247 0.67 0.763904
Target:  5'- -cCAGCUCCGacucggGGUCCGCCGCagacggggcgGCCg -3'
miRNA:   3'- auGUCGAGGUa-----CUGGGCGGCGaa--------CGG- -5'
23567 3' -57.7 NC_005261.1 + 121186 0.67 0.744594
Target:  5'- cACGGggCCGgggccgGGCCCgggGCCGCggGCCg -3'
miRNA:   3'- aUGUCgaGGUa-----CUGGG---CGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 119865 0.68 0.674357
Target:  5'- gUGC-GCUCCcUGA-CCGCCGCa-GCCg -3'
miRNA:   3'- -AUGuCGAGGuACUgGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 119537 0.67 0.714903
Target:  5'- cGCGGC-CgAgcaagGcCCCGCCGCgggGCCg -3'
miRNA:   3'- aUGUCGaGgUa----CuGGGCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 119063 0.75 0.313704
Target:  5'- gGCAGCugcuUCgCGUGAUCCGCCgGCUgGCCg -3'
miRNA:   3'- aUGUCG----AG-GUACUGGGCGG-CGAaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.