miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 134125 0.71 0.535426
Target:  5'- cACAGCUCguucaucaccgggagCGUGACggCGCCGC-UGCCg -3'
miRNA:   3'- aUGUCGAG---------------GUACUGg-GCGGCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 133935 0.7 0.561559
Target:  5'- cGCGGCggCCGcggGGCCCGCgGCcguguucgUGCCg -3'
miRNA:   3'- aUGUCGa-GGUa--CUGGGCGgCGa-------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 133840 0.69 0.622949
Target:  5'- cGCGuGCgcgCCGUGGCCgGCgCGCgcgacUGCCg -3'
miRNA:   3'- aUGU-CGa--GGUACUGGgCG-GCGa----ACGG- -5'
23567 3' -57.7 NC_005261.1 + 133831 0.66 0.791959
Target:  5'- gGCAGCgcgccgCCGccGCCCgGCCGCgUGCg -3'
miRNA:   3'- aUGUCGa-----GGUacUGGG-CGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 133761 0.66 0.80103
Target:  5'- cGCGGCgCCGcgcgacgGGCcgCCGCCGCUggaggGCCc -3'
miRNA:   3'- aUGUCGaGGUa------CUG--GGCGGCGAa----CGG- -5'
23567 3' -57.7 NC_005261.1 + 133401 0.68 0.664111
Target:  5'- cGCGGC-CCAaaacaaGGCCCGCuCGCUggUGUCg -3'
miRNA:   3'- aUGUCGaGGUa-----CUGGGCG-GCGA--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 133395 0.66 0.809947
Target:  5'- cUGCGGCgcg--GACgCCGCCGCcUGCg -3'
miRNA:   3'- -AUGUCGagguaCUG-GGCGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 133328 0.67 0.754304
Target:  5'- cGCAGCUCCugccGGCaCgCGCgCGCggcgcUGCCg -3'
miRNA:   3'- aUGUCGAGGua--CUG-G-GCG-GCGa----ACGG- -5'
23567 3' -57.7 NC_005261.1 + 131753 0.66 0.816963
Target:  5'- gACGGCacgCCGgccggcgcggcgGGCgCGCCGCUggGCCc -3'
miRNA:   3'- aUGUCGa--GGUa-----------CUGgGCGGCGAa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 130592 0.69 0.633249
Target:  5'- cGCGGCcCCGcgccUGGCCCGUC-UUUGCCu -3'
miRNA:   3'- aUGUCGaGGU----ACUGGGCGGcGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 130320 0.67 0.754304
Target:  5'- cUGCAGCgCCAUGgacgGCCCGgCCGC--GCUc -3'
miRNA:   3'- -AUGUCGaGGUAC----UGGGC-GGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 128796 0.66 0.773387
Target:  5'- --gGGCgCCcgGGCCCGCgGCgggGCUc -3'
miRNA:   3'- augUCGaGGuaCUGGGCGgCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 128110 0.68 0.664111
Target:  5'- gGCGGCgguggUgGUGGCugucgCCGCCGC-UGCCg -3'
miRNA:   3'- aUGUCGa----GgUACUG-----GGCGGCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 127865 0.67 0.750432
Target:  5'- cGCAGCgcgcgcgugucggCCGUGACaaaCGCCGa--GCCg -3'
miRNA:   3'- aUGUCGa------------GGUACUGg--GCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 127707 0.67 0.714903
Target:  5'- gACAGCgagcgcgCCGcggGGCCCGCaGCggcgGCCg -3'
miRNA:   3'- aUGUCGa------GGUa--CUGGGCGgCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 127064 0.76 0.259845
Target:  5'- gUACGGgUCCAUgGugCCGCCGCcgcGCCg -3'
miRNA:   3'- -AUGUCgAGGUA-CugGGCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 126870 0.78 0.213772
Target:  5'- cACcGCUCCAUGGCCCGCagcaGCgcaggGCCc -3'
miRNA:   3'- aUGuCGAGGUACUGGGCGg---CGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 126317 0.67 0.744594
Target:  5'- cGCAGCcgCCGgccgggccgGGCCCGCgGCggGCg -3'
miRNA:   3'- aUGUCGa-GGUa--------CUGGGCGgCGaaCGg -5'
23567 3' -57.7 NC_005261.1 + 125860 0.67 0.763904
Target:  5'- --gAGCUcaCCAUcgaaGACgCGCCGgUUGCCg -3'
miRNA:   3'- augUCGA--GGUA----CUGgGCGGCgAACGG- -5'
23567 3' -57.7 NC_005261.1 + 125663 0.67 0.724884
Target:  5'- aGCAGCgcgUCAUacGugCCGCCGaauggguUUGCCg -3'
miRNA:   3'- aUGUCGa--GGUA--CugGGCGGCg------AACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.