Results 21 - 40 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 87443 | 0.66 | 0.782741 |
Target: 5'- gGCGGCgCCggGGCggccgCCGCCGCggugUGCg -3' miRNA: 3'- aUGUCGaGGuaCUG-----GGCGGCGa---ACGg -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 78215 | 0.66 | 0.782741 |
Target: 5'- gGCgGGCUCUucGUGucccuGCCCGUCGCgcUGCCc -3' miRNA: 3'- aUG-UCGAGG--UAC-----UGGGCGGCGa-ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 10886 | 0.66 | 0.773387 |
Target: 5'- cGCgGGC-CCAgcgcCCCGCCGCUccgGCCc -3' miRNA: 3'- aUG-UCGaGGUacu-GGGCGGCGAa--CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 114492 | 0.66 | 0.795605 |
Target: 5'- cGCccCUCCcgGACgCGCCucggcgcggccacccGCUUGCCa -3' miRNA: 3'- aUGucGAGGuaCUGgGCGG---------------CGAACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 97808 | 0.66 | 0.773387 |
Target: 5'- cUGCGGCUCaacgccguguaCGUGGCCCuGUCGCgcagcgUGUCc -3' miRNA: 3'- -AUGUCGAG-----------GUACUGGG-CGGCGa-----ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 68968 | 0.66 | 0.773387 |
Target: 5'- gGCGGCUCgCcgGGgUCGgCGCggGCCa -3' miRNA: 3'- aUGUCGAG-GuaCUgGGCgGCGaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 30416 | 0.66 | 0.80103 |
Target: 5'- gGCGGCggCCGcuaGGgCCGCCGCgcgcgagGCCc -3' miRNA: 3'- aUGUCGa-GGUa--CUgGGCGGCGaa-----CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 121496 | 0.66 | 0.80103 |
Target: 5'- gGCGGCgcCCGcgcGGCUCGCCGaggGCCa -3' miRNA: 3'- aUGUCGa-GGUa--CUGGGCGGCgaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 108526 | 0.66 | 0.773387 |
Target: 5'- gGCGGCU-CAUGGCCacgcagGCCGCcacgUGCg -3' miRNA: 3'- aUGUCGAgGUACUGGg-----CGGCGa---ACGg -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 42742 | 0.66 | 0.791959 |
Target: 5'- cGCGGgUCgAUG--CCGCCGCggGCCu -3' miRNA: 3'- aUGUCgAGgUACugGGCGGCGaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 56162 | 0.66 | 0.773387 |
Target: 5'- cUGCGGCacgCCGUcGACCCGgCGaCgugGCCc -3' miRNA: 3'- -AUGUCGa--GGUA-CUGGGCgGC-Gaa-CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 125121 | 0.66 | 0.789208 |
Target: 5'- cGCGGCcgCCGacgcccccgagccgaGCCCGCCGCccGCCg -3' miRNA: 3'- aUGUCGa-GGUac-------------UGGGCGGCGaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 48002 | 0.66 | 0.809947 |
Target: 5'- gACGGCgcgCCc--GCCCGCCGCgcgaggGCg -3' miRNA: 3'- aUGUCGa--GGuacUGGGCGGCGaa----CGg -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 99281 | 0.66 | 0.782741 |
Target: 5'- cGCAGCccgcgcgCCGcGGCCCGCCcggccgccgGCUUGgCg -3' miRNA: 3'- aUGUCGa------GGUaCUGGGCGG---------CGAACgG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 133831 | 0.66 | 0.791959 |
Target: 5'- gGCAGCgcgccgCCGccGCCCgGCCGCgUGCg -3' miRNA: 3'- aUGUCGa-----GGUacUGGG-CGGCGaACGg -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 73542 | 0.66 | 0.80103 |
Target: 5'- gGCGGCcCCggGACgCGCCcggUGCCg -3' miRNA: 3'- aUGUCGaGGuaCUGgGCGGcgaACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 4544 | 0.66 | 0.809947 |
Target: 5'- cGCAGCUCCcagcgGAgCgaGCCGUUggcGCCg -3' miRNA: 3'- aUGUCGAGGua---CUgGg-CGGCGAa--CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 84921 | 0.66 | 0.773387 |
Target: 5'- cUGCGGcCUCCugaucGACCCGCgcacgggggCGCUUGgCg -3' miRNA: 3'- -AUGUC-GAGGua---CUGGGCG---------GCGAACgG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 50062 | 0.66 | 0.773387 |
Target: 5'- -cCGGCgucgCCccGGCCCgGCUGCgcgGCCg -3' miRNA: 3'- auGUCGa---GGuaCUGGG-CGGCGaa-CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 134781 | 0.66 | 0.782741 |
Target: 5'- cGCGGCgCgGcGGCCCGCgCGCccGCCu -3' miRNA: 3'- aUGUCGaGgUaCUGGGCG-GCGaaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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