miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 49622 0.72 0.454444
Target:  5'- aGCAGCgucacgaCCGUGGCgCCGCCGg--GCCg -3'
miRNA:   3'- aUGUCGa------GGUACUG-GGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 14810 0.72 0.454444
Target:  5'- cUGCGGC-CCGUGgcgaGCCCGCCcCUgGCCg -3'
miRNA:   3'- -AUGUCGaGGUAC----UGGGCGGcGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 29499 0.74 0.343651
Target:  5'- cGCGGCgccgCCGcUGGCCCGCgCGCUcuucGCCg -3'
miRNA:   3'- aUGUCGa---GGU-ACUGGGCG-GCGAa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 105838 0.74 0.335975
Target:  5'- cACGcGCUCCggGACgCCGCCGCgccgcGCCu -3'
miRNA:   3'- aUGU-CGAGGuaCUG-GGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 82865 0.75 0.321002
Target:  5'- gGCGGCgggCCAggcugGGCCUGCCGCU-GCUu -3'
miRNA:   3'- aUGUCGa--GGUa----CUGGGCGGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 119063 0.75 0.313704
Target:  5'- gGCAGCugcuUCgCGUGAUCCGCCgGCUgGCCg -3'
miRNA:   3'- aUGUCG----AG-GUACUGGGCGG-CGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 68721 0.75 0.299488
Target:  5'- -cCAGCUCCGgcaGCCCGCCGCcgGCg -3'
miRNA:   3'- auGUCGAGGUac-UGGGCGGCGaaCGg -5'
23567 3' -57.7 NC_005261.1 + 136425 0.76 0.253059
Target:  5'- cGCGGCUCUAccccggGGCgCCGCCGCUgcggcucUGCCg -3'
miRNA:   3'- aUGUCGAGGUa-----CUG-GGCGGCGA-------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 40060 0.79 0.183977
Target:  5'- gGCGGCUCCAaGgacacACCCGCCGCccgcggccUUGCCg -3'
miRNA:   3'- aUGUCGAGGUaC-----UGGGCGGCG--------AACGG- -5'
23567 3' -57.7 NC_005261.1 + 92596 0.8 0.157911
Target:  5'- cACuGCUCCGgcgcgGGCCCGCCGCgccgcGCCg -3'
miRNA:   3'- aUGuCGAGGUa----CUGGGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 48394 0.74 0.367428
Target:  5'- cGCGGC-CCuccGGCCCgGCCGCgaagUGCCg -3'
miRNA:   3'- aUGUCGaGGua-CUGGG-CGGCGa---ACGG- -5'
23567 3' -57.7 NC_005261.1 + 99736 0.74 0.367428
Target:  5'- aUACGacGCUCCAgucGACgCCGCCGCg-GCCg -3'
miRNA:   3'- -AUGU--CGAGGUa--CUG-GGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 77179 0.72 0.451672
Target:  5'- aAguGCUCCA-GGCCCagcaccagccagcuGCCGCggUGCCg -3'
miRNA:   3'- aUguCGAGGUaCUGGG--------------CGGCGa-ACGG- -5'
23567 3' -57.7 NC_005261.1 + 40002 0.72 0.43614
Target:  5'- cGCGGaaaUCgAUG-CCCGCCGCgcUGCCg -3'
miRNA:   3'- aUGUCg--AGgUACuGGGCGGCGa-ACGG- -5'
23567 3' -57.7 NC_005261.1 + 47326 0.72 0.427148
Target:  5'- aAgAGCgccgCCGaGACCUGCCGCgccaUGCCg -3'
miRNA:   3'- aUgUCGa---GGUaCUGGGCGGCGa---ACGG- -5'
23567 3' -57.7 NC_005261.1 + 10440 0.72 0.427148
Target:  5'- cGCGGCgCC--GGCCCGCCGCUcgagcaGCCg -3'
miRNA:   3'- aUGUCGaGGuaCUGGGCGGCGAa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 89361 0.73 0.409499
Target:  5'- gGCGGCUgcgccgCCAUGGCCCgGgCGCUggGCCu -3'
miRNA:   3'- aUGUCGA------GGUACUGGG-CgGCGAa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 39261 0.73 0.409499
Target:  5'- gACGuGCUCCggGACCUGCCGa--GCCu -3'
miRNA:   3'- aUGU-CGAGGuaCUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 134220 0.73 0.383896
Target:  5'- gGCGGCcugcguggCCAUGAgCCGCCGCUacgacUGCg -3'
miRNA:   3'- aUGUCGa-------GGUACUgGGCGGCGA-----ACGg -5'
23567 3' -57.7 NC_005261.1 + 78429 0.74 0.375601
Target:  5'- cGCGGCgCCAcgccGGCCUGCCGCccGCCg -3'
miRNA:   3'- aUGUCGaGGUa---CUGGGCGGCGaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.