miRNA display CGI


Results 21 - 40 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 29499 0.74 0.343651
Target:  5'- cGCGGCgccgCCGcUGGCCCGCgCGCUcuucGCCg -3'
miRNA:   3'- aUGUCGa---GGU-ACUGGGCG-GCGAa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 64848 0.74 0.343651
Target:  5'- cUGCAGCgCCAUGACCgCGUCGCgucCCa -3'
miRNA:   3'- -AUGUCGaGGUACUGG-GCGGCGaacGG- -5'
23567 3' -57.7 NC_005261.1 + 82877 0.74 0.343651
Target:  5'- gACGGCgcuggCgGUGGCCuCGCCGCgcGCCg -3'
miRNA:   3'- aUGUCGa----GgUACUGG-GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 124413 0.74 0.343651
Target:  5'- cUGCAGCgCCAUGGCCUGCuucauCGCgcGCCg -3'
miRNA:   3'- -AUGUCGaGGUACUGGGCG-----GCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 39035 0.74 0.351452
Target:  5'- aGCAGCUCCAcgcggUGAUCCGgUCGCggaaGCCg -3'
miRNA:   3'- aUGUCGAGGU-----ACUGGGC-GGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 99736 0.74 0.367428
Target:  5'- aUACGacGCUCCAgucGACgCCGCCGCg-GCCg -3'
miRNA:   3'- -AUGU--CGAGGUa--CUG-GGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 48394 0.74 0.367428
Target:  5'- cGCGGC-CCuccGGCCCgGCCGCgaagUGCCg -3'
miRNA:   3'- aUGUCGaGGua-CUGGG-CGGCGa---ACGG- -5'
23567 3' -57.7 NC_005261.1 + 78429 0.74 0.375601
Target:  5'- cGCGGCgCCAcgccGGCCUGCCGCccGCCg -3'
miRNA:   3'- aUGUCGaGGUa---CUGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 106738 0.74 0.375601
Target:  5'- gUGCAGC-CCcgGcgccuccgcGCCCGCCacgaGCUUGCCg -3'
miRNA:   3'- -AUGUCGaGGuaC---------UGGGCGG----CGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 29703 0.73 0.383896
Target:  5'- gGCGGCcugcguggCCAUGAgCCGCCGCUacgacUGCg -3'
miRNA:   3'- aUGUCGa-------GGUACUgGGCGGCGA-----ACGg -5'
23567 3' -57.7 NC_005261.1 + 135053 0.73 0.383896
Target:  5'- cUGCGGCggCAgcGGCCCGCCGCUUuCCg -3'
miRNA:   3'- -AUGUCGagGUa-CUGGGCGGCGAAcGG- -5'
23567 3' -57.7 NC_005261.1 + 134220 0.73 0.383896
Target:  5'- gGCGGCcugcguggCCAUGAgCCGCCGCUacgacUGCg -3'
miRNA:   3'- aUGUCGa-------GGUACUgGGCGGCGA-----ACGg -5'
23567 3' -57.7 NC_005261.1 + 79521 0.73 0.383896
Target:  5'- -cCAGCUCCGcgagcggGACCCGCCGCacGUa -3'
miRNA:   3'- auGUCGAGGUa------CUGGGCGGCGaaCGg -5'
23567 3' -57.7 NC_005261.1 + 57299 0.73 0.387248
Target:  5'- aGCAGCcgcgcgacguccucgUCCAUGACUCGCaGC-UGCCa -3'
miRNA:   3'- aUGUCG---------------AGGUACUGGGCGgCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 40767 0.73 0.399988
Target:  5'- cUGCAGUgCCAUGgagaccaGCCCGCCGCgcagGCUc -3'
miRNA:   3'- -AUGUCGaGGUAC-------UGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 12197 0.73 0.400847
Target:  5'- aUGCAGCgccgCCGccgGugCCGCCGCcgcugcUGCCg -3'
miRNA:   3'- -AUGUCGa---GGUa--CugGGCGGCGa-----ACGG- -5'
23567 3' -57.7 NC_005261.1 + 122690 0.73 0.400847
Target:  5'- cUGCGccuGCUCCAUcGCCgCGCCGCcgGCCg -3'
miRNA:   3'- -AUGU---CGAGGUAcUGG-GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 42894 0.73 0.400847
Target:  5'- -cCGGCUCggcaCGUGACCCGgCGCUccgggGCCg -3'
miRNA:   3'- auGUCGAG----GUACUGGGCgGCGAa----CGG- -5'
23567 3' -57.7 NC_005261.1 + 39261 0.73 0.409499
Target:  5'- gACGuGCUCCggGACCUGCCGa--GCCu -3'
miRNA:   3'- aUGU-CGAGGuaCUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 89361 0.73 0.409499
Target:  5'- gGCGGCUgcgccgCCAUGGCCCgGgCGCUggGCCu -3'
miRNA:   3'- aUGUCGA------GGUACUGGG-CgGCGAa-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.