miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 4448 0.68 0.674357
Target:  5'- aGCAGCgggcccUCCAgcggcggcGGCCCGUCGCgcggcGCCg -3'
miRNA:   3'- aUGUCG------AGGUa-------CUGGGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 4544 0.66 0.809947
Target:  5'- cGCAGCUCCcagcgGAgCgaGCCGUUggcGCCg -3'
miRNA:   3'- aUGUCGAGGua---CUgGg-CGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 5107 0.67 0.724884
Target:  5'- cACAGCUCCGccaGCUCGgCGCgggcgGCCc -3'
miRNA:   3'- aUGUCGAGGUac-UGGGCgGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 5271 0.68 0.653838
Target:  5'- gGgAGacgCCAUGGCCgGCCGCggUGCg -3'
miRNA:   3'- aUgUCga-GGUACUGGgCGGCGa-ACGg -5'
23567 3' -57.7 NC_005261.1 + 6392 0.67 0.754304
Target:  5'- ---cGUUCCGcccccuUGACCCGCgCGCguugGCCc -3'
miRNA:   3'- auguCGAGGU------ACUGGGCG-GCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 6450 0.7 0.592121
Target:  5'- cGCGGCgucggggcCCAgcgGcgcGCCCGCCGCgccgGCCg -3'
miRNA:   3'- aUGUCGa-------GGUa--C---UGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 7928 0.71 0.531442
Target:  5'- --gAGCUCCAUccuGCUCGCCGcCUUGUCc -3'
miRNA:   3'- augUCGAGGUAc--UGGGCGGC-GAACGG- -5'
23567 3' -57.7 NC_005261.1 + 8662 0.67 0.733798
Target:  5'- cGCGGCcgccuccUCCucuacGCCCGCCGuCUUGCa -3'
miRNA:   3'- aUGUCG-------AGGuac--UGGGCGGC-GAACGg -5'
23567 3' -57.7 NC_005261.1 + 9424 0.69 0.622949
Target:  5'- cGCAGCg-CGaGcCCCGCCGCggGCCc -3'
miRNA:   3'- aUGUCGagGUaCuGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 10174 0.72 0.463752
Target:  5'- gACGGCUCC-UGccGCCUcuGCCGCUcGCCc -3'
miRNA:   3'- aUGUCGAGGuAC--UGGG--CGGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 10207 0.69 0.602377
Target:  5'- cGCGuGCUCCcagGGCCCGC-GCcUGCCc -3'
miRNA:   3'- aUGU-CGAGGua-CUGGGCGgCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 10440 0.72 0.427148
Target:  5'- cGCGGCgCC--GGCCCGCCGCUcgagcaGCCg -3'
miRNA:   3'- aUGUCGaGGuaCUGGGCGGCGAa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 10462 0.66 0.783669
Target:  5'- cUGCAGCUCUcgcccgagcaggccGGCCCGCUGCaccgGCUu -3'
miRNA:   3'- -AUGUCGAGGua------------CUGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 10534 0.71 0.511691
Target:  5'- cGCAGCUCCuccGGCgCCGCCGgggcagcgGCCg -3'
miRNA:   3'- aUGUCGAGGua-CUG-GGCGGCgaa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 10886 0.66 0.773387
Target:  5'- cGCgGGC-CCAgcgcCCCGCCGCUccgGCCc -3'
miRNA:   3'- aUG-UCGaGGUacu-GGGCGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 10963 0.66 0.8187
Target:  5'- cGCGGCgggcgGGCCCGCCGUagcGCUg -3'
miRNA:   3'- aUGUCGagguaCUGGGCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 11008 0.67 0.763904
Target:  5'- -cCGGCUCCucgacGGCCuCGUCGCcggGCCc -3'
miRNA:   3'- auGUCGAGGua---CUGG-GCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 11928 0.66 0.8187
Target:  5'- gGCGGCUgCGgcGGCCCgcGCCGCggcgGCUc -3'
miRNA:   3'- aUGUCGAgGUa-CUGGG--CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 12114 0.69 0.602377
Target:  5'- -cCAGCUCUagcgccaggAUGgcGCCCGCCGCcgcggcgGCCg -3'
miRNA:   3'- auGUCGAGG---------UAC--UGGGCGGCGaa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 12197 0.73 0.400847
Target:  5'- aUGCAGCgccgCCGccgGugCCGCCGCcgcugcUGCCg -3'
miRNA:   3'- -AUGUCGa---GGUa--CugGGCGGCGa-----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.