miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 137982 0.69 0.633249
Target:  5'- cGCAGCcgCCGccgcagccgGGCCCGCuCGCgggGCCc -3'
miRNA:   3'- aUGUCGa-GGUa--------CUGGGCG-GCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 137826 0.66 0.8187
Target:  5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3'
miRNA:   3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 137779 0.67 0.734784
Target:  5'- gGCGcGCcCCcgGGcCCCGCCGCccgcGCCg -3'
miRNA:   3'- aUGU-CGaGGuaCU-GGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 136781 0.66 0.8187
Target:  5'- aGCcGCacgCCGaGGCgCCGCCGCUggUGCUg -3'
miRNA:   3'- aUGuCGa--GGUaCUG-GGCGGCGA--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 136665 0.66 0.80103
Target:  5'- gGgGGCUC---GGCgCGCCGCUgcgGCCg -3'
miRNA:   3'- aUgUCGAGguaCUGgGCGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 136465 0.68 0.694736
Target:  5'- gGCAGCcCCA-GACUCGCgCGCggGCa -3'
miRNA:   3'- aUGUCGaGGUaCUGGGCG-GCGaaCGg -5'
23567 3' -57.7 NC_005261.1 + 136425 0.76 0.253059
Target:  5'- cGCGGCUCUAccccggGGCgCCGCCGCUgcggcucUGCCg -3'
miRNA:   3'- aUGUCGAGGUa-----CUG-GGCGGCGA-------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 135923 0.67 0.734784
Target:  5'- gUGguGCUCUAcGACCCGCUGCccggggagGCg -3'
miRNA:   3'- -AUguCGAGGUaCUGGGCGGCGaa------CGg -5'
23567 3' -57.7 NC_005261.1 + 135627 0.66 0.773387
Target:  5'- gGCGGCcccgCCGccGACggcggcuuCCGCCGCgUGCCg -3'
miRNA:   3'- aUGUCGa---GGUa-CUG--------GGCGGCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 135577 0.67 0.734784
Target:  5'- cGCGGCgg---GAgCCGCCGCU-GCCc -3'
miRNA:   3'- aUGUCGagguaCUgGGCGGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 135467 0.7 0.541421
Target:  5'- gGgGGCgggCCucgaGGCCCGCCGCgacgGCCc -3'
miRNA:   3'- aUgUCGa--GGua--CUGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 135053 0.73 0.383896
Target:  5'- cUGCGGCggCAgcGGCCCGCCGCUUuCCg -3'
miRNA:   3'- -AUGUCGagGUa-CUGGGCGGCGAAcGG- -5'
23567 3' -57.7 NC_005261.1 + 134820 0.68 0.684569
Target:  5'- cGCGcGCUCUucaGCCCGCCGgCggaagUGCCg -3'
miRNA:   3'- aUGU-CGAGGuacUGGGCGGC-Ga----ACGG- -5'
23567 3' -57.7 NC_005261.1 + 134781 0.66 0.782741
Target:  5'- cGCGGCgCgGcGGCCCGCgCGCccGCCu -3'
miRNA:   3'- aUGUCGaGgUaCUGGGCG-GCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 134680 0.7 0.571705
Target:  5'- aGCGGCgCCGc-GCCCGCCGCgcugcgcGCCg -3'
miRNA:   3'- aUGUCGaGGUacUGGGCGGCGaa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 134644 0.67 0.734784
Target:  5'- aGCgAGC-CCA-GACCCGCCcCgaGCCg -3'
miRNA:   3'- aUG-UCGaGGUaCUGGGCGGcGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 134552 0.7 0.571705
Target:  5'- cUGCAGCgggCCGcGGCCUGCCgGCcgcgGCCu -3'
miRNA:   3'- -AUGUCGa--GGUaCUGGGCGG-CGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 134360 0.66 0.782741
Target:  5'- aGCuGCgcgCCGUGcucGCCgGCCGCgcggcGCCg -3'
miRNA:   3'- aUGuCGa--GGUAC---UGGgCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 134220 0.73 0.383896
Target:  5'- gGCGGCcugcguggCCAUGAgCCGCCGCUacgacUGCg -3'
miRNA:   3'- aUGUCGa-------GGUACUgGGCGGCGA-----ACGg -5'
23567 3' -57.7 NC_005261.1 + 134165 0.66 0.773387
Target:  5'- cGgGGCUgCugcuCCCGCUGCUUGCg -3'
miRNA:   3'- aUgUCGAgGuacuGGGCGGCGAACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.