miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 29314 0.66 0.791959
Target:  5'- gGCAGCgcgccgCCGccGCCCgGCCGCgUGCg -3'
miRNA:   3'- aUGUCGa-----GGUacUGGG-CGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 71424 0.66 0.791959
Target:  5'- cGgGGCccggCCcgGGCCCGCgGCgcgcaGCCg -3'
miRNA:   3'- aUgUCGa---GGuaCUGGGCGgCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 91481 0.66 0.791959
Target:  5'- aGCGGCgccgCCGcGG-CCGCCGCccGCCc -3'
miRNA:   3'- aUGUCGa---GGUaCUgGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 95192 0.66 0.791959
Target:  5'- -cCAGC-CCuggGACCCgcGCCGCccGCCc -3'
miRNA:   3'- auGUCGaGGua-CUGGG--CGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 106575 0.66 0.791959
Target:  5'- -cCGGC-CCcgGGgCCGCCGCgcgGCg -3'
miRNA:   3'- auGUCGaGGuaCUgGGCGGCGaa-CGg -5'
23567 3' -57.7 NC_005261.1 + 125121 0.66 0.789208
Target:  5'- cGCGGCcgCCGacgcccccgagccgaGCCCGCCGCccGCCg -3'
miRNA:   3'- aUGUCGa-GGUac-------------UGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 10462 0.66 0.783669
Target:  5'- cUGCAGCUCUcgcccgagcaggccGGCCCGCUGCaccgGCUu -3'
miRNA:   3'- -AUGUCGAGGua------------CUGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 114979 0.66 0.783669
Target:  5'- cUGCAGCUCUcgcccgagcaggccGGCCCGCUGCaccgGCUu -3'
miRNA:   3'- -AUGUCGAGGua------------CUGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 134360 0.66 0.782741
Target:  5'- aGCuGCgcgCCGUGcucGCCgGCCGCgcggcGCCg -3'
miRNA:   3'- aUGuCGa--GGUAC---UGGgCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 87443 0.66 0.782741
Target:  5'- gGCGGCgCCggGGCggccgCCGCCGCggugUGCg -3'
miRNA:   3'- aUGUCGaGGuaCUG-----GGCGGCGa---ACGg -5'
23567 3' -57.7 NC_005261.1 + 84101 0.66 0.782741
Target:  5'- gUGCGGCgugCCGUGggacgaGCCCGCgGUcgUGCg -3'
miRNA:   3'- -AUGUCGa--GGUAC------UGGGCGgCGa-ACGg -5'
23567 3' -57.7 NC_005261.1 + 134781 0.66 0.782741
Target:  5'- cGCGGCgCgGcGGCCCGCgCGCccGCCu -3'
miRNA:   3'- aUGUCGaGgUaCUGGGCG-GCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 99281 0.66 0.782741
Target:  5'- cGCAGCccgcgcgCCGcGGCCCGCCcggccgccgGCUUGgCg -3'
miRNA:   3'- aUGUCGa------GGUaCUGGGCGG---------CGAACgG- -5'
23567 3' -57.7 NC_005261.1 + 20762 0.66 0.782741
Target:  5'- aGCAGCgcgucgCCGccGACCUGCCGCaccuucUGCa -3'
miRNA:   3'- aUGUCGa-----GGUa-CUGGGCGGCGa-----ACGg -5'
23567 3' -57.7 NC_005261.1 + 124195 0.66 0.782741
Target:  5'- gACcGCUCgCAUGGCCC--CGCUgGCCa -3'
miRNA:   3'- aUGuCGAG-GUACUGGGcgGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 78215 0.66 0.782741
Target:  5'- gGCgGGCUCUucGUGucccuGCCCGUCGCgcUGCCc -3'
miRNA:   3'- aUG-UCGAGG--UAC-----UGGGCGGCGa-ACGG- -5'
23567 3' -57.7 NC_005261.1 + 103768 0.66 0.782741
Target:  5'- gUGCAGCagCGccACCCagGCCGCggGCCg -3'
miRNA:   3'- -AUGUCGagGUacUGGG--CGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 29843 0.66 0.782741
Target:  5'- aGCuGCgcgCCGUGcucGCCgGCCGCgcggcGCCg -3'
miRNA:   3'- aUGuCGa--GGUAC---UGGgCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 117676 0.66 0.782741
Target:  5'- cGC-GC-CCGgccgGGCCCGCgGCgagGCCg -3'
miRNA:   3'- aUGuCGaGGUa---CUGGGCGgCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 100885 0.66 0.782741
Target:  5'- cGCAGCcCCucguacgcGGCCuCGCCGCgcaccGCCg -3'
miRNA:   3'- aUGUCGaGGua------CUGG-GCGGCGaa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.