miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 54378 0.66 0.809947
Target:  5'- aGCGGCUCgGggcGCCCGCgaagGCcgUGCCg -3'
miRNA:   3'- aUGUCGAGgUac-UGGGCGg---CGa-ACGG- -5'
23567 3' -57.7 NC_005261.1 + 103562 0.66 0.809947
Target:  5'- aGgGGCcCCGUGcCgCCGCCGCccgcGCCg -3'
miRNA:   3'- aUgUCGaGGUACuG-GGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 20859 0.66 0.80103
Target:  5'- gGCGGCUCU----UgCGCCGCggGCCg -3'
miRNA:   3'- aUGUCGAGGuacuGgGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 32147 0.66 0.80103
Target:  5'- gGgGGCUC---GGCgCGCCGCUgcgGCCg -3'
miRNA:   3'- aUgUCGAGguaCUGgGCGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 121840 0.66 0.80103
Target:  5'- gGCGGCgcaccggcgCCAgcaGCCCGCgGCUcccGCCg -3'
miRNA:   3'- aUGUCGa--------GGUac-UGGGCGgCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 83058 0.66 0.80103
Target:  5'- gGgGGCUCCcUGcgcGCCC-CCGCggcgGCCg -3'
miRNA:   3'- aUgUCGAGGuAC---UGGGcGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 29244 0.66 0.80103
Target:  5'- cGCGGCgCCGcgcgacgGGCcgCCGCCGCUggaggGCCc -3'
miRNA:   3'- aUGUCGaGGUa------CUG--GGCGGCGAa----CGG- -5'
23567 3' -57.7 NC_005261.1 + 136665 0.66 0.80103
Target:  5'- gGgGGCUC---GGCgCGCCGCUgcgGCCg -3'
miRNA:   3'- aUgUCGAGguaCUGgGCGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 42617 0.66 0.80103
Target:  5'- cGCGGCgcaaagUCCAgcgggGACUCgGCCGCcgcgGCCg -3'
miRNA:   3'- aUGUCG------AGGUa----CUGGG-CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 30416 0.66 0.80103
Target:  5'- gGCGGCggCCGcuaGGgCCGCCGCgcgcgagGCCc -3'
miRNA:   3'- aUGUCGa-GGUa--CUgGGCGGCGaa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 60494 0.66 0.80103
Target:  5'- aGgGGCUCCcaguUGuACCggCGCCGCUUGgCu -3'
miRNA:   3'- aUgUCGAGGu---AC-UGG--GCGGCGAACgG- -5'
23567 3' -57.7 NC_005261.1 + 121496 0.66 0.80103
Target:  5'- gGCGGCgcCCGcgcGGCUCGCCGaggGCCa -3'
miRNA:   3'- aUGUCGa-GGUa--CUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 73542 0.66 0.80103
Target:  5'- gGCGGCcCCggGACgCGCCcggUGCCg -3'
miRNA:   3'- aUGUCGaGGuaCUGgGCGGcgaACGG- -5'
23567 3' -57.7 NC_005261.1 + 72897 0.66 0.80103
Target:  5'- aACGGCaacaUCCcgGugCCGCUGU--GCCc -3'
miRNA:   3'- aUGUCG----AGGuaCugGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 133761 0.66 0.80103
Target:  5'- cGCGGCgCCGcgcgacgGGCcgCCGCCGCUggaggGCCc -3'
miRNA:   3'- aUGUCGaGGUa------CUG--GGCGGCGAa----CGG- -5'
23567 3' -57.7 NC_005261.1 + 37528 0.66 0.80103
Target:  5'- cGCGGCUCgGgcgGcGCgCGCCGCg-GCCg -3'
miRNA:   3'- aUGUCGAGgUa--C-UGgGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 77819 0.66 0.80013
Target:  5'- gGCGGC-CCcgGGCCCGggccggcCCGC--GCCa -3'
miRNA:   3'- aUGUCGaGGuaCUGGGC-------GGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 114492 0.66 0.795605
Target:  5'- cGCccCUCCcgGACgCGCCucggcgcggccacccGCUUGCCa -3'
miRNA:   3'- aUGucGAGGuaCUGgGCGG---------------CGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 133831 0.66 0.791959
Target:  5'- gGCAGCgcgccgCCGccGCCCgGCCGCgUGCg -3'
miRNA:   3'- aUGUCGa-----GGUacUGGG-CGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 42742 0.66 0.791959
Target:  5'- cGCGGgUCgAUG--CCGCCGCggGCCu -3'
miRNA:   3'- aUGUCgAGgUACugGGCGGCGaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.